Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FH040_RS01890 Genome accession   NZ_CP040927
Coordinates   417926..418558 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain YY76-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 412926..423558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH040_RS01865 (FH040_01865) yhfG 413058..413225 (+) 168 WP_000736860.1 YhfG family protein -
  FH040_RS01870 (FH040_01870) fic 413215..413817 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  FH040_RS01875 (FH040_01875) pabA 413849..414412 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  FH040_RS01880 (FH040_01880) argD 414498..415718 (+) 1221 WP_000963792.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  FH040_RS01885 (FH040_01885) yhfK 415785..417875 (-) 2091 WP_148245862.1 YccS/YhfK family putative transporter -
  FH040_RS01890 (FH040_01890) crp 417926..418558 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  FH040_RS01895 (FH040_01895) yhfA 418860..419264 (+) 405 WP_001148908.1 OsmC family protein -
  FH040_RS01900 (FH040_01900) prkB 419319..420188 (-) 870 WP_001274680.1 phosphoribulokinase -
  FH040_RS01905 (FH040_01905) yheU 420242..420460 (-) 219 WP_000907085.1 YheU family protein -
  FH040_RS01910 (FH040_01910) yheT 420454..421476 (-) 1023 WP_000057356.1 hydrolase -
  FH040_RS01915 (FH040_01915) yheS 421476..423389 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=323724 FH040_RS01890 WP_000242755.1 417926..418558(-) (crp) [Escherichia coli strain YY76-1]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=323724 FH040_RS01890 WP_000242755.1 417926..418558(-) (crp) [Escherichia coli strain YY76-1]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTTGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467