Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   D5285_RS19900 Genome accession   NZ_CP033389
Coordinates   3868687..3869424 (-) Length   245 a.a.
NCBI ID   WP_026580174.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CBMAI 1303     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3863687..3874424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5285_RS19865 (D5285_19865) fliW 3863838..3864269 (-) 432 WP_035337783.1 flagellar assembly protein FliW -
  D5285_RS19870 (D5285_19870) - 3864291..3864857 (-) 567 WP_020453109.1 DUF6470 family protein -
  D5285_RS19875 (D5285_19875) flgL 3864907..3865818 (-) 912 WP_020453110.1 flagellar hook-associated protein FlgL -
  D5285_RS19880 (D5285_19880) flgK 3865829..3867352 (-) 1524 WP_020453111.1 flagellar hook-associated protein FlgK -
  D5285_RS19885 (D5285_19885) - 3867368..3867844 (-) 477 WP_023856391.1 flagellar protein FlgN -
  D5285_RS19890 (D5285_19890) flgM 3867863..3868129 (-) 267 WP_020453113.1 flagellar biosynthesis anti-sigma factor FlgM -
  D5285_RS19895 (D5285_19895) - 3868209..3868628 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  D5285_RS19900 (D5285_19900) comFC 3868687..3869424 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  D5285_RS19905 (D5285_19905) - 3869381..3869665 (-) 285 WP_020453116.1 late competence development ComFB family protein -
  D5285_RS19910 (D5285_19910) comFA 3869720..3871114 (-) 1395 WP_020453117.1 DEAD/DEAH box helicase Machinery gene
  D5285_RS19915 (D5285_19915) - 3871238..3872080 (-) 843 WP_020453118.1 DegV family protein -
  D5285_RS19920 (D5285_19920) degU 3872200..3872889 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  D5285_RS19925 (D5285_19925) degS 3872971..3874128 (-) 1158 WP_020453119.1 histidine kinase Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28124.81 Da        Isoelectric Point: 9.9151

>NTDB_id=323590 D5285_RS19900 WP_026580174.1 3868687..3869424(-) (comFC) [Bacillus paralicheniformis strain CBMAI 1303]
MTTRFAKAIEKGGNELHCLICEAPLLHSLSWRALFFLRSEEKICRACKDNFIRIEGRTVCPKCGRPQESEELCGDCLKWE
ADPLTRSLLRQNRSVYIYNTFMKEVLARFKFRGDAELVFAFAPLFINAFHQYYRRTPAVLVPIPLSEERKAERGFNQAER
LASLLKKPVMHPLIRIENEKQSKKSRKERIKPKTVFRTEKGSVKNLDIILIDDLYTTGATLHHAAACLMTSGEAKSVSSF
TLIRS

Nucleotide


Download         Length: 738 bp        

>NTDB_id=323590 D5285_RS19900 WP_026580174.1 3868687..3869424(-) (comFC) [Bacillus paralicheniformis strain CBMAI 1303]
ATGACAACCCGCTTTGCGAAAGCAATCGAAAAGGGAGGAAATGAACTGCATTGTTTAATTTGTGAAGCGCCTCTTTTACA
TTCTCTTTCATGGCGCGCTTTATTCTTTTTACGATCAGAAGAGAAAATATGCAGGGCATGTAAAGACAATTTTATCAGGA
TCGAAGGAAGAACGGTGTGCCCTAAGTGCGGGCGCCCCCAAGAGAGCGAAGAACTTTGCGGTGACTGCCTAAAATGGGAA
GCTGATCCGTTAACCCGCTCTCTTTTGAGGCAAAACCGCTCTGTCTATATCTACAATACCTTCATGAAAGAAGTCCTTGC
CCGTTTTAAGTTCAGAGGTGATGCTGAACTGGTCTTCGCTTTTGCTCCTTTATTTATCAATGCTTTCCACCAATATTACC
GCCGCACTCCAGCTGTTTTAGTTCCGATACCACTCAGTGAAGAACGTAAAGCGGAGCGGGGATTCAATCAGGCGGAGAGG
CTTGCTTCCTTATTAAAAAAACCCGTTATGCATCCTTTGATCAGAATCGAAAATGAAAAACAATCCAAAAAAAGCAGAAA
AGAACGGATCAAGCCCAAAACGGTTTTTAGAACCGAAAAGGGATCGGTAAAGAATCTGGATATCATATTGATCGACGACT
TGTATACGACAGGGGCGACCCTTCATCATGCCGCTGCTTGTCTGATGACATCCGGTGAGGCAAAATCTGTATCATCATTT
ACATTAATTCGAAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(17-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

53.782

97.143

0.522

Multiple sequence alignment