Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   FHI56_RS08540 Genome accession   NZ_CP040804
Coordinates   1509388..1510068 (-) Length   226 a.a.
NCBI ID   WP_004182305.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LAB813     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1504388..1515068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS08520 (FHI56_08520) - 1504940..1505434 (-) 495 WP_149561387.1 YkgJ family cysteine cluster protein -
  FHI56_RS08525 (FHI56_08525) - 1505519..1507519 (-) 2001 WP_149561388.1 ABC transporter permease -
  FHI56_RS08530 (FHI56_08530) - 1507521..1508279 (-) 759 WP_037610458.1 ABC transporter ATP-binding protein -
  FHI56_RS08535 (FHI56_08535) - 1508424..1509398 (-) 975 WP_045772320.1 sensor histidine kinase -
  FHI56_RS08540 (FHI56_08540) braR 1509388..1510068 (-) 681 WP_004182305.1 response regulator transcription factor Regulator
  FHI56_RS08545 (FHI56_08545) - 1510517..1511098 (+) 582 WP_004182304.1 xanthine phosphoribosyltransferase -
  FHI56_RS08550 (FHI56_08550) - 1511098..1512366 (+) 1269 WP_045772319.1 nucleobase:cation symporter-2 family protein -
  FHI56_RS08555 (FHI56_08555) - 1512489..1514057 (-) 1569 WP_149561389.1 ABC transporter ATP-binding protein -
  FHI56_RS08560 (FHI56_08560) - 1514188..1515021 (+) 834 WP_014632966.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26073.42 Da        Isoelectric Point: 4.9992

>NTDB_id=323592 FHI56_RS08540 WP_004182305.1 1509388..1510068(-) (braR) [Streptococcus salivarius strain LAB813]
MHKILLVEDDEVIRQQVKKMLEQWGYEVVLVEDFMEVLSIFVKVEPHLVLMDIGLPLFNGYHWCQEIRKVSKVPIMFLSS
RDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQSLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQIL
QVLFDHAGNIVSREDLMKELWNSDFFIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGYGLRHDG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=323592 FHI56_RS08540 WP_004182305.1 1509388..1510068(-) (braR) [Streptococcus salivarius strain LAB813]
ATGCATAAGATTTTATTAGTGGAGGACGACGAGGTTATCCGTCAACAAGTCAAAAAAATGCTAGAACAGTGGGGTTACGA
AGTTGTTCTTGTTGAAGATTTCATGGAAGTATTATCTATTTTTGTAAAAGTAGAGCCCCACTTGGTTCTTATGGATATTG
GTTTACCTCTATTCAACGGTTATCATTGGTGTCAGGAAATTCGTAAGGTCTCCAAGGTGCCTATTATGTTCTTGTCTTCG
AGAGATCAGGCCATGGATATTGTTATGGCAATCAATATGGGCGGGGACGACTTTGTGACTAAACCTTTTGACCAAAATGT
TCTCCTAGCAAAAATTCAAGGGCTTTTGCGTCGTTCATATGAGTTTGGTAAGGATCAGAGTCTCTTGGAATATATGGGTG
TGATTCTGAACCTTAAGGCCATGGATTTGGTTTATCAGGGAGAGGTCGTTTCTTTGACAAAGAATGAGTTTCAGATTTTA
CAAGTTCTCTTTGATCATGCTGGTAATATCGTTAGTCGGGAAGACCTGATGAAGGAGCTTTGGAATAGTGACTTCTTTAT
TGATGACAATACCCTGTCAGTTAATGTAGCTCGTTTACGTAAGAAGTTAGAGGCAGTGGGTTTGAAGGATTTTATTGAAA
CCAAGAAAGGTGTTGGCTACGGGTTGCGTCATGATGGGTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-221)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

52.294

96.46

0.504
  micA Streptococcus pneumoniae Cp1015

35.043

100

0.363

Multiple sequence alignment