Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   D5285_RS17985 Genome accession   NZ_CP033389
Coordinates   3497342..3497980 (-) Length   212 a.a.
NCBI ID   WP_003184849.1    Uniprot ID   D9YRJ9
Organism   Bacillus paralicheniformis strain CBMAI 1303     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3492342..3502980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5285_RS17950 (D5285_17950) - 3493532..3493963 (+) 432 WP_003184834.1 Na(+)/H(+) antiporter subunit B -
  D5285_RS17955 (D5285_17955) - 3493963..3494304 (+) 342 WP_020452785.1 Na(+)/H(+) antiporter subunit C -
  D5285_RS17960 (D5285_17960) - 3494297..3495775 (+) 1479 WP_020452786.1 Na+/H+ antiporter subunit D -
  D5285_RS17965 (D5285_17965) - 3495781..3496257 (+) 477 WP_020452787.1 Na+/H+ antiporter subunit E -
  D5285_RS17970 (D5285_17970) - 3496257..3496541 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  D5285_RS17975 (D5285_17975) mnhG 3496525..3496899 (+) 375 WP_023856153.1 monovalent cation/H(+) antiporter subunit G -
  D5285_RS17980 (D5285_17980) - 3496936..3497325 (-) 390 WP_009329508.1 hotdog fold thioesterase -
  D5285_RS17985 (D5285_17985) comA 3497342..3497980 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  D5285_RS17990 (D5285_17990) comP 3498067..3499686 (-) 1620 WP_122934983.1 sensor histidine kinase Regulator
  D5285_RS17995 (D5285_17995) - 3499826..3500536 (-) 711 WP_183163973.1 hypothetical protein -
  D5285_RS18000 (D5285_18000) comX 3500665..3500835 (-) 171 WP_020452790.1 competence pheromone ComX -
  D5285_RS18005 (D5285_18005) - 3500807..3501718 (-) 912 WP_020452791.1 polyprenyl synthetase family protein -
  D5285_RS18010 (D5285_18010) degQ 3501905..3502045 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  D5285_RS18020 (D5285_18020) - 3502531..3502878 (+) 348 WP_223254849.1 hypothetical protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24146.54 Da        Isoelectric Point: 4.7105

>NTDB_id=323583 D5285_RS17985 WP_003184849.1 3497342..3497980(-) (comA) [Bacillus paralicheniformis strain CBMAI 1303]
MRRLLVIDDHPAVMEGTKAILETNQDFVVDCLSPEASEQFLKKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYFKQLITQQKSKSNSQQTQHDLLTERECLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFSKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=323583 D5285_RS17985 WP_003184849.1 3497342..3497980(-) (comA) [Bacillus paralicheniformis strain CBMAI 1303]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAAACGAACCAGGACTT
TGTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTCAAGAAGCATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTAAATTTGGGTGAAATCAACGGCATGGACCTATCTAAGAAAATCCTTGAGACGTGTTCATCATGCAAAATTATC
GTTTACACAGGCTATGAAGTCGAAGATTATTTTGAAGAGGCGATTCGTTCCGGCATGCACGGCGCCATCAGCAAAACGGA
ATCGAAGGAAAAGATTATAGAGTACATATATCAGGTACTGGATAATAAAATTGTCGTCGATTATGATTATTTCAAGCAGC
TGATTACACAGCAAAAATCGAAGTCAAACAGCCAGCAGACCCAGCACGATCTTTTGACTGAAAGGGAATGCCTGATCTTA
AAAGAAGTCGAAAAAGGCTATACAAATCAGGAAATCGCTGATGCGCTTCATTTAAGCAAGCGGTCGATCGAATACAGTCT
GACTTCCGTATTCAGCAAACTGAATGTAGGATCACGGACAGAGGCTGTTTTAATCGCGAAATCTGAAGGCGTACTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9YRJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

77.103

100

0.778

Multiple sequence alignment