Detailed information NTG0323460

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: JL719_RS04085
• Genome accession: NZ_CP033381
• Coordinates: 942445..943785 (+)
• Length: 446 a.a.
• NCBI ID: WP_033156098.1
• Uniprot ID: A0A2N0VAX9
• Organism: Methylomonas sp. LW13
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 937445..948785

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JL719_RS04070 (U737_04115)	sucD	938684..939559 (-)	876	WP_033156095.1	succinate--CoA ligase subunit alpha	-
JL719_RS04075 (U737_04120)	sucC	939559..940728 (-)	1170	WP_033156096.1	ADP-forming succinate--CoA ligase subunit beta	-
JL719_RS04080 (U737_04125)	-	940904..942448 (+)	1545	WP_084153250.1	sensor histidine kinase	-
JL719_RS04085 (U737_04130)	pilR	942445..943785 (+)	1341	WP_033156098.1	sigma-54-dependent transcriptional regulator	Regulator
JL719_RS04090 (U737_04135)	-	943845..944333 (-)	489	WP_033156099.1	hypothetical protein	-
JL719_RS04095 (U737_04140)	-	944485..946320 (-)	1836	WP_033156100.1	GGDEF and EAL domain-containing protein	-
JL719_RS04100 (U737_04145)	-	946501..947352 (+)	852	WP_033156101.1	HDOD domain-containing protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49164.85 Da
• Isoelectric Point: 5.5174

>NTDB_id=323460 JL719_RS04085 WP_033156098.1 942445..943785(+) (pilR) [Methylomonas sp. LW13]
MNMPVTLVVDDEPDIQELLEITLNRMHIQTRCAANLAEAKQLLAVEVFDLCLTDMKLPDGDGLDLVDHIQLAGLQLPVAV
ITAHGSMDIAIKAMKKGAFDFLSKPVDLGVLRQLVSHALQASLTRVSDKERRTRDILLGESALMCAIRSKIDKVARNQAP
VYISGESGSGKELVARLIHQQSPRGEKPFIAVNCGAIPPELMESEFFGHKKGSFTGAVADKQGLFQAADGGTLFLDEVAD
LPLPLQVKLLRAIQEKKVRPVGEQREVAVDVRLLSATHKDLTKMVQEGSFRQDLYYRINVIELSLPPLRARPADIPQLTE
HLLAGLANANGMDLPKLSDSALNALKHYYFPGNVRELENILERALALHDGGVIEADDLNLPLGMELAAVEDFDAEKMSLE
AYLEDIEKKALSAALEENRWNKTATAKYLGLSFRSLRYRLKKLGLE

Nucleotide

• Length: 1341 bp

>NTDB_id=323460 JL719_RS04085 WP_033156098.1 942445..943785(+) (pilR) [Methylomonas sp. LW13]
ATGAATATGCCTGTCACCCTGGTTGTCGATGACGAACCCGACATCCAAGAATTACTCGAAATAACCCTGAACCGCATGCA
CATTCAAACTCGCTGCGCGGCCAATTTGGCCGAGGCCAAACAGTTACTGGCCGTTGAAGTGTTTGATTTGTGTCTCACCG
ATATGAAGCTGCCGGACGGCGATGGGCTGGATTTGGTCGATCATATTCAATTGGCCGGTTTGCAGTTACCGGTGGCGGTG
ATTACTGCGCATGGCAGCATGGATATTGCGATCAAAGCCATGAAAAAGGGAGCTTTTGACTTCCTGTCCAAGCCGGTCGA
TTTGGGGGTATTGCGGCAGCTGGTCAGTCATGCGCTGCAAGCCTCGCTAACTAGGGTTTCCGACAAGGAGCGCCGTACCC
GCGACATCTTGCTAGGCGAATCGGCATTAATGTGCGCTATTCGCTCGAAGATCGACAAGGTGGCGCGCAACCAGGCGCCG
GTTTATATCAGCGGAGAGTCCGGTTCGGGCAAGGAGTTGGTGGCCAGATTGATACACCAGCAAAGCCCGCGCGGGGAGAA
ACCGTTTATTGCGGTTAATTGCGGAGCGATTCCGCCTGAATTGATGGAAAGCGAATTCTTCGGGCATAAAAAAGGCAGTT
TCACCGGCGCGGTAGCCGACAAGCAAGGATTGTTTCAGGCGGCCGATGGCGGCACCTTGTTTTTGGATGAAGTGGCTGAT
TTGCCTTTGCCCTTGCAAGTCAAATTGTTGCGGGCAATTCAAGAGAAAAAGGTTCGCCCGGTTGGCGAGCAGCGGGAAGT
AGCCGTTGATGTGCGCTTATTGAGCGCAACCCACAAGGATTTGACCAAGATGGTCCAAGAAGGCAGTTTTAGGCAGGATT
TGTACTACCGGATCAATGTCATCGAGCTGAGTTTGCCACCCCTGCGCGCCCGGCCTGCTGATATTCCTCAGCTTACCGAA
CACTTATTGGCGGGCTTGGCTAATGCCAACGGTATGGATTTGCCCAAACTCAGCGACTCTGCGCTAAATGCGTTAAAGCA
CTACTATTTTCCCGGCAATGTTCGGGAGCTGGAAAATATATTGGAGCGGGCGCTGGCCTTGCACGATGGCGGCGTGATTG
AAGCCGACGATCTGAACTTGCCGTTGGGGATGGAATTGGCTGCGGTCGAAGATTTCGACGCCGAGAAAATGTCGCTGGAA
GCCTATCTCGAAGACATAGAGAAAAAAGCCTTGAGTGCGGCGCTGGAGGAAAATCGTTGGAACAAAACCGCTACCGCTAA
ATACTTGGGTCTAAGCTTCCGTTCGCTGCGGTATCGTTTGAAAAAGTTGGGTCTTGAATAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (138-303)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Response regulator receiver domain (Response_reg) (7-115)

3D structure

• AlphaFold DB: A0A2N0VAX9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.636	100	0.643
pilR	Acinetobacter baumannii strain A118	49.46	100	0.513
luxO	Vibrio cholerae strain A1552	39.14	99.103	0.388