Detailed information NTG0323409

Bioinformatically predicted

Overview

• Name: uvrB
• Type: Machinery gene
• Locus tag: FG899_RS09365
• Genome accession: NZ_CP040799
• Coordinates: 2038077..2040086 (-)
• Length: 669 a.a.
• NCBI ID: WP_004089700.1
• Uniprot ID: Q87AT6
• Organism: Xylella fastidiosa subsp. fastidiosa strain Bakersfield-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2033077..2045086

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FG899_RS09330 (FG899_09725)	-	2034331..2034609 (+)	279	WP_011097962.1	VRR-NUC domain-containing protein	-
FG899_RS09335 (FG899_09730)	-	2034611..2034895 (-)	285	WP_011098229.1	DUF1640 domain-containing protein	-
FG899_RS09340 (FG899_09735)	-	2034980..2036398 (+)	1419	WP_011098230.1	DEAD/DEAH box helicase	-
FG899_RS09345 (FG899_09740)	-	2036395..2036634 (+)	240	WP_011098231.1	hypothetical protein	-
FG899_RS09350 (FG899_09745)	-	2036621..2036944 (+)	324	WP_004089706.1	helix-turn-helix domain-containing protein	-
FG899_RS09355 (FG899_09750)	-	2037271..2037891 (+)	621	WP_014607459.1	tyrosine-type recombinase/integrase	-
FG899_RS09365 (FG899_09760)	uvrB	2038077..2040086 (-)	2010	WP_004089700.1	excinuclease ABC subunit UvrB	Machinery gene
FG899_RS09370 (FG899_09765)	-	2040241..2040828 (+)	588	WP_011098232.1	Tfp pilus assembly protein FimT/FimU	-
FG899_RS09375 (FG899_09770)	-	2041286..2041792 (-)	507	WP_004089696.1	hypothetical protein	-
FG899_RS09380 (FG899_09775)	dapA	2041812..2042720 (-)	909	WP_004089694.1	4-hydroxy-tetrahydrodipicolinate synthase	-
FG899_RS09385 (FG899_09780)	-	2042873..2043448 (+)	576	WP_011098233.1	glycine cleavage system protein R	-
FG899_RS09390 (FG899_09785)	-	2043495..2043974 (+)	480	WP_004089690.1	peroxiredoxin	-

Sequence

Protein

• Length: 669 a.a.
• Molecular weight: 75438.07 Da
• Isoelectric Point: 5.2614

>NTDB_id=323409 FG899_RS09365 WP_004089700.1 2038077..2040086(-) (uvrB) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-1]
MTGLFQLVSSYSPSGDQPAAVQKLVTNFHAGIAKQVLLGVTGSGKTYTIANVVEQIQKPTLVMAPNKTLAAQLYGEFKAF
FPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSSINEYIEQMRLAATKALLSRSDVLVVATVSAIYGLGAPEDYLSLRLI
LSLGEHIEQRQLIRHLTELQYTRNELDLVRGSFRVRGEVVDVFPAESEMEALRIELFDGEIESLSLFDPLTGQTVRKLQR
FSVYPKTHYATTRERTLSAVDTIKDELKEYLELLYGRNKLVEAQRLAQRTQFDLEMMAEVGYCNGIENYSRHLTGKAPGE
PPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVEFGFRLPSALDNRPLRFEEWEVRSPRSIYVSATPGSYE
FRESAGEVIELLVRPTGLIDPEIEIRPVATQVDDLISQINACIKLGDRVLVTTLTKRMAENLTEYLSEQGIRIRYLHSEI
DTVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAARSVRGRAILYADKVTRS
MRAAIDETERRRQKQKEYNAENGIVPKSVVRPISDILEGARDGVEVKSKGKGRRVDEVPADYGALNQAEIAAQMKVLEQK
MYQHARDLEFEDAARIRDQIQRLREAGLG

Nucleotide

• Length: 2010 bp

>NTDB_id=323409 FG899_RS09365 WP_004089700.1 2038077..2040086(-) (uvrB) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-1]
ATGACAGGTTTGTTTCAGCTTGTTTCTTCATACTCTCCTTCTGGGGATCAGCCTGCGGCTGTACAGAAGCTAGTCACTAA
TTTCCATGCTGGCATTGCTAAGCAGGTGTTGCTTGGCGTTACTGGTTCTGGGAAGACTTACACCATCGCTAATGTGGTTG
AGCAGATTCAGAAGCCAACTCTGGTGATGGCGCCAAACAAGACGTTGGCAGCACAGCTTTACGGGGAATTCAAGGCGTTC
TTCCCGCACAATGCGGTGGAATATTTTGTCAGCTACTATGACTACTATCAGCCTGAGGCGTATGTTCCAGCCTCGGACAC
GTTCATTGAAAAGGACAGTTCTATCAATGAATACATTGAACAGATGCGTTTGGCTGCAACGAAGGCTTTGCTGTCACGTT
CTGATGTGTTGGTGGTGGCGACCGTGTCGGCGATTTATGGTTTGGGTGCGCCTGAGGATTATCTTTCGTTACGTTTGATT
TTGTCGCTGGGTGAGCATATTGAGCAGCGGCAATTGATCAGGCATCTCACTGAGTTGCAGTACACTCGTAACGAGTTGGA
TTTGGTGCGTGGTAGTTTCCGTGTACGTGGTGAGGTTGTTGATGTATTCCCGGCTGAGTCAGAGATGGAGGCGCTGCGCA
TTGAGTTGTTTGATGGTGAGATAGAAAGTTTGAGCTTGTTCGATCCGCTTACCGGTCAGACGGTACGTAAGTTGCAACGT
TTTAGTGTTTACCCTAAAACCCACTATGCAACTACGCGTGAACGTACGCTCAGTGCCGTTGATACGATCAAGGATGAGCT
GAAAGAGTATCTAGAACTTCTGTATGGGCGGAATAAGTTGGTTGAGGCGCAACGTTTAGCTCAGCGTACTCAGTTCGACT
TAGAGATGATGGCCGAGGTTGGTTATTGCAATGGTATTGAAAATTACTCTCGTCACTTAACTGGTAAGGCTCCGGGGGAA
CCTCCACCGACGTTGTTCGATTATCTTCCTCCGGATGCGCTACTGGTCATTGATGAGTCGCATGTGACAATTCCGCAGAT
CGGTGCGATGTTCAAGGGGGACCGTTCCCGTAAAGAAACGCTGGTGGAATTTGGTTTCCGTTTACCATCGGCGTTAGACA
ATCGACCGCTTCGCTTTGAGGAATGGGAAGTGCGTTCGCCGCGTAGCATTTACGTCTCGGCGACTCCAGGATCATATGAG
TTCCGCGAGTCCGCGGGTGAAGTCATAGAGTTGCTGGTGCGTCCGACCGGCTTGATTGATCCTGAGATAGAAATCCGTCC
GGTTGCGACGCAGGTGGATGATCTGATTTCCCAGATCAATGCGTGTATCAAGTTAGGTGATCGGGTTTTGGTCACCACGT
TAACTAAGCGTATGGCTGAGAACCTCACTGAATATTTGAGCGAGCAGGGTATCCGGATACGTTATTTGCATTCGGAAATC
GATACGGTAGAACGTGTGGAGATCATCCGTGATTTGCGTCTTGGTAAATTCGATGTGCTGGTTGGTATCAACCTTCTACG
TGAGGGATTGGATATGCCGGAGGTGTCGTTGGTGGCCATTCTTGACGCTGATAAAGAGGGGTTTTTGCGTTCGACCAGTT
CACTGATTCAGACGATTGGTCGTGCCGCACGCAGTGTGCGCGGTAGGGCAATCTTGTATGCCGATAAAGTGACTCGTTCA
ATGCGCGCTGCAATTGATGAAACCGAGCGACGTCGACAAAAGCAGAAGGAATACAATGCTGAGAACGGTATTGTTCCGAA
ATCCGTTGTACGGCCCATTAGCGACATTTTGGAGGGTGCGCGAGATGGTGTCGAGGTGAAGAGCAAGGGGAAGGGGCGCA
GAGTTGATGAGGTTCCCGCTGACTATGGTGCGCTTAATCAAGCTGAGATTGCCGCACAGATGAAAGTGCTGGAGCAAAAG
ATGTACCAGCATGCGCGTGATTTGGAGTTTGAGGATGCGGCGCGTATTCGCGATCAAATTCAGCGGCTTAGGGAGGCTGG
TCTGGGTTAA

Domains

Predicted by InterProScan.

• Ultra-violet resistance protein B (UvrB) (552-593)

• Type III restriction enzyme, res subunit (ResIII) (16-92)

• UvrB/uvrC motif (UVR) (635-665)

• UvrB interaction domain (UvrB_inter) (160-249)

• Helicase conserved C-terminal domain (Helicase_C) (441-544)

3D structure

• AlphaFold DB: Q87AT6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
uvrB	Streptococcus pneumoniae TIGR4	55.03	98.057	0.54
uvrB	Streptococcus pneumoniae R6	54.878	98.057	0.538
uvrB	Streptococcus pneumoniae D39	54.878	98.057	0.538