Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SMI_RS06605 Genome accession   NC_013853
Coordinates   1295060..1297042 (-) Length   660 a.a.
NCBI ID   WP_000747539.1    Uniprot ID   -
Organism   Streptococcus mitis B6     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1290060..1302042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS06580 (smi_1297) - 1290288..1291127 (-) 840 WP_000182488.1 amino acid ABC transporter substrate-binding protein -
  SMI_RS06585 (smi_1298) - 1291137..1291766 (-) 630 WP_000891752.1 amino acid ABC transporter ATP-binding protein -
  SMI_RS06590 (smi_1299) - 1291776..1292417 (-) 642 WP_000120838.1 amino acid ABC transporter permease -
  SMI_RS06595 (smi_1300) - 1292557..1293786 (-) 1230 WP_001065935.1 tetratricopeptide repeat protein -
  SMI_RS06600 (smi_1301) - 1293776..1294942 (-) 1167 WP_000435446.1 AI-2E family transporter -
  SMI_RS06605 (smi_1302) amiA3 1295060..1297042 (-) 1983 WP_000747539.1 peptide ABC transporter substrate-binding protein Regulator
  SMI_RS06610 (smi_1303) - 1297447..1298613 (-) 1167 WP_000163007.1 IS30-like element ISSmi1 family transposase -
  SMI_RS06615 (smi_1304) - 1298815..1299828 (+) 1014 WP_000665633.1 lactonase family protein -
  SMI_RS06620 (smi_1305) - 1300020..1300532 (+) 513 Protein_1271 transposase -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 72686.09 Da        Isoelectric Point: 5.1116

>NTDB_id=32310 SMI_RS06605 WP_000747539.1 1295060..1297042(-) (amiA3) [Streptococcus mitis B6]
MKKRVFLAAGVAVLSVAVLAACSSGNGNKEATKPVTYTYVFSSDPATLDYTVSGQKSTKQITGNVIDGLLENDQYGNLVP
SVAEDWTVSKDGLTYTYKIRKGIKWYTNEGEEYGEVKAQDFVTGLKHAADKKSEALYLVQDSIKGLDDYVNGKTTDFSTV
GVKATDDYTVVYTLNHPESFWNSKTTMGILAPVSEDFLASKGDDFGKATDVTSILYNGAYLLKGLTSKSSIEMTKNQNYW
DKQNVFIDDIKLSYFDGQDADSLGRGFDEGNYPAAPLFKNSANYERLKEKYKDNIIYSQQQGTTFYISTNIDRVAYNHTA
KTSDVEKSSTKKALLNKDFRQSLAFATDRKAGISQVFGDEVAPRKLRTSLTPPTFVQVGEQSFGQVAKAELDKLDGVWKD
VSLDDAQDSLHNVDKAKTKFEAAKKTLQADGVQFPIHLDIPVSSTRPEFVRQAQSYKQSVEEAIGADNVVVDIQQVSDDE
LASMTVLATSNTNTDWDINANSGWGPDYADPSTYLDIFDPTSGPNLLGSLGVVPGKDSSAIKAVGLDKFKELITDANSEK
TNLEKRYAKYAKAQAWLTDSALVIPVHSDGAQMLVTKKVLGTGAGGWVGDKTSENSYKYLKIQDKIVTTKEMDEFRKKFA
DEKAKSNADYQKNLDRHIQD

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=32310 SMI_RS06605 WP_000747539.1 1295060..1297042(-) (amiA3) [Streptococcus mitis B6]
ATGAAAAAACGTGTTTTCTTAGCAGCAGGAGTTGCTGTACTCTCGGTAGCTGTTCTAGCAGCTTGTTCATCTGGTAATGG
GAATAAGGAAGCAACTAAACCAGTTACTTATACCTATGTATTTTCATCAGATCCTGCGACTCTGGATTATACAGTTTCTG
GGCAAAAGTCTACAAAACAGATTACTGGTAATGTCATTGATGGACTACTGGAAAATGATCAATATGGTAATCTGGTCCCA
TCAGTTGCAGAAGATTGGACTGTTTCAAAAGATGGCTTGACTTATACATATAAAATTCGTAAGGGTATTAAGTGGTATAC
CAATGAAGGCGAAGAATATGGAGAAGTTAAGGCTCAGGATTTTGTGACTGGTCTAAAACACGCTGCTGACAAGAAATCAG
AAGCACTTTATCTTGTACAGGATTCTATTAAAGGATTAGATGACTATGTAAATGGGAAAACAACCGATTTTTCTACTGTT
GGTGTAAAAGCAACAGACGATTATACTGTAGTCTATACTTTAAACCATCCAGAATCTTTCTGGAATTCGAAGACAACAAT
GGGAATTCTTGCTCCTGTTAGCGAAGACTTTTTAGCTTCTAAAGGAGATGACTTTGGTAAGGCGACTGATGTAACAAGCA
TTCTATATAATGGGGCTTATCTTTTAAAAGGTCTTACATCTAAATCTTCTATTGAAATGACTAAAAACCAAAACTATTGG
GATAAACAAAATGTCTTTATTGATGATATTAAGCTGTCTTACTTTGATGGTCAGGATGCAGACTCTCTAGGACGTGGTTT
TGATGAAGGAAATTATCCTGCAGCACCTCTATTTAAAAACTCTGCTAACTATGAACGGCTAAAAGAAAAATATAAAGATA
ACATTATTTATAGTCAACAACAAGGAACTACTTTCTATATTTCGACGAATATTGACCGTGTTGCCTACAATCACACCGCT
AAAACAAGTGATGTAGAAAAATCATCTACTAAGAAGGCTTTGTTGAACAAAGATTTCCGTCAATCCTTGGCTTTTGCTAC
AGATCGTAAAGCAGGAATCTCTCAAGTATTTGGGGACGAAGTAGCACCGCGTAAATTACGTACAAGTTTAACCCCTCCAA
CATTTGTACAGGTAGGAGAGCAGTCATTTGGGCAAGTAGCTAAGGCAGAATTGGATAAATTAGATGGTGTATGGAAAGAT
GTCAGTCTTGATGATGCCCAGGATTCACTTCATAATGTAGATAAGGCTAAGACTAAATTTGAAGCTGCCAAGAAAACTCT
TCAAGCTGATGGAGTACAGTTCCCTATTCATTTAGATATTCCAGTATCTTCTACTCGTCCAGAATTTGTGCGTCAAGCTC
AATCTTATAAACAATCCGTCGAGGAAGCTATTGGAGCAGATAATGTTGTAGTTGATATTCAACAAGTTTCTGACGATGAA
TTGGCAAGTATGACAGTTCTAGCTACTTCTAATACTAATACTGACTGGGATATTAATGCAAATAGTGGATGGGGACCTGA
TTATGCAGATCCGTCAACTTATCTAGATATATTTGATCCAACATCTGGACCAAATCTTCTTGGCTCCTTAGGCGTAGTAC
CAGGTAAAGACAGTTCAGCAATCAAAGCGGTTGGGTTAGATAAGTTTAAAGAGTTAATTACTGATGCTAATAGTGAGAAA
ACAAATCTTGAAAAACGATATGCTAAATATGCAAAAGCTCAAGCTTGGTTAACAGACAGTGCCTTGGTTATTCCTGTACA
CTCAGATGGTGCCCAAATGCTAGTAACGAAGAAAGTTCTAGGTACTGGTGCCGGTGGCTGGGTAGGTGATAAGACCAGTG
AAAATAGCTACAAGTATCTGAAAATTCAAGATAAGATAGTCACTACTAAAGAAATGGATGAGTTCCGCAAGAAATTTGCT
GATGAAAAAGCCAAATCCAATGCTGATTATCAGAAAAACTTAGACCGTCATATTCAAGACTAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

54.985

100

0.552
  amiA3 Streptococcus thermophilus LMG 18311

54.532

100

0.547
  amiA Streptococcus salivarius strain HSISS4

54.614

100

0.547

Multiple sequence alignment