Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   D9Y32_RS09435 Genome accession   NZ_CP033218
Coordinates   1863921..1865315 (+) Length   464 a.a.
NCBI ID   WP_003185720.1    Uniprot ID   A0AB37GV19
Organism   Bacillus licheniformis strain TCCC 11148     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1858921..1870315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9Y32_RS09410 (D9Y32_09420) - 1858967..1860043 (-) 1077 WP_003185737.1 LCP family protein -
  D9Y32_RS09415 (D9Y32_09425) - 1860058..1860696 (-) 639 WP_142782350.1 YigZ family protein -
  D9Y32_RS09420 (D9Y32_09430) degS 1860910..1862067 (+) 1158 WP_003185733.1 histidine kinase Regulator
  D9Y32_RS09425 (D9Y32_09435) degU 1862149..1862838 (+) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  D9Y32_RS09430 (D9Y32_09440) - 1862958..1863800 (+) 843 WP_003185726.1 DegV family protein -
  D9Y32_RS09435 (D9Y32_09445) comFA 1863921..1865315 (+) 1395 WP_003185720.1 DEAD/DEAH box helicase Machinery gene
  D9Y32_RS09440 (D9Y32_09450) - 1865370..1865654 (+) 285 WP_003185718.1 late competence development ComFB family protein -
  D9Y32_RS09445 (D9Y32_09455) comFC 1865611..1866345 (+) 735 WP_011198352.1 amidophosphoribosyltransferase Machinery gene
  D9Y32_RS09450 (D9Y32_09460) - 1866404..1866823 (+) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  D9Y32_RS09455 (D9Y32_09465) flgM 1866903..1867169 (+) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  D9Y32_RS09460 (D9Y32_09470) - 1867188..1867664 (+) 477 WP_003185711.1 flagellar protein FlgN -
  D9Y32_RS09465 (D9Y32_09475) flgK 1867680..1869203 (+) 1524 WP_003185709.1 flagellar hook-associated protein FlgK -
  D9Y32_RS09470 (D9Y32_09480) flgL 1869214..1870125 (+) 912 WP_003185705.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52848.50 Da        Isoelectric Point: 9.9576

>NTDB_id=322716 D9Y32_RS09435 WP_003185720.1 1863921..1865315(+) (comFA) [Bacillus licheniformis strain TCCC 11148]
MIHIEQPAFYTRELRSCLEQRHLLKSELPFRESVVDWHIQEGLIKTEEGIKKTKKGFICLRCGQHERSFFARYPCYRCSK
CCVYCRSCVMMGRVSDCTPLLTWHMHVSHKWAPVHTEWKGALSAGQEKAAKSIINAIRRKEELLVWAVCGSGKTELLFQG
IEFALNNGLTVCIATPRTDVVLELAPRFRQAFPGVEIAALYGGSSDVGNLSPLIISTTHQLLRYKEAFDVIIIDEVDAFP
YSIDNTLQYAVKKSAKRQSAHIYLTATPSADMKKRAESGKLDTVRIPARFHRSPLPEPTLIWCGNWKKSLKRRKVPFRLK
KWLFKHQELQQPVFLFVPSVPVLKSVVSVLKKETFRAEGVYADDPDRNEKVNRFRESKLEVLVTTTILERGVTVKKAQVG
VLGAESAVFTESALVQMAGRAGRHPEHTDGDVCFFHYGRTKSMNAARRHIQNMNKMSKKEMLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=322716 D9Y32_RS09435 WP_003185720.1 1863921..1865315(+) (comFA) [Bacillus licheniformis strain TCCC 11148]
GTGATTCACATCGAACAACCGGCATTCTATACCCGTGAATTGCGGTCATGTTTGGAGCAGCGCCACCTTCTGAAAAGCGA
ACTTCCTTTTCGTGAATCCGTCGTTGATTGGCATATCCAAGAAGGCTTGATAAAAACGGAGGAAGGTATTAAAAAAACGA
AGAAAGGCTTTATTTGTTTGAGGTGCGGCCAGCACGAACGCTCATTTTTCGCCCGGTATCCTTGCTATCGGTGCAGTAAA
TGCTGCGTGTACTGCCGATCCTGCGTCATGATGGGCAGGGTGAGCGATTGTACGCCTCTGTTGACTTGGCACATGCATGT
CAGCCATAAATGGGCGCCTGTTCATACGGAGTGGAAAGGCGCGCTTTCAGCAGGTCAGGAGAAAGCGGCCAAATCCATTA
TCAATGCTATACGAAGAAAAGAAGAACTGTTGGTCTGGGCGGTTTGCGGGTCGGGGAAAACAGAACTTCTCTTTCAAGGG
ATCGAATTCGCGCTGAACAACGGCTTGACAGTATGTATCGCTACTCCGAGAACCGATGTCGTACTCGAGCTTGCTCCGCG
GTTTCGCCAAGCCTTTCCAGGGGTGGAAATTGCCGCTTTGTACGGAGGAAGCTCAGACGTTGGGAATCTCTCGCCGCTTA
TCATTTCAACTACCCACCAGCTGCTCCGCTATAAAGAAGCATTTGACGTGATCATCATAGATGAGGTGGATGCTTTTCCG
TATTCTATTGATAACACGCTGCAATACGCTGTTAAAAAATCGGCAAAACGGCAAAGCGCTCACATCTATTTAACTGCCAC
GCCTTCAGCAGATATGAAAAAAAGGGCTGAGAGCGGAAAGCTGGACACCGTCCGTATTCCCGCGAGATTCCACCGCAGCC
CCTTGCCTGAACCTACATTGATTTGGTGCGGAAATTGGAAAAAGAGTTTGAAACGAAGAAAAGTTCCTTTTCGCCTCAAA
AAATGGCTTTTTAAGCACCAAGAACTGCAGCAACCGGTTTTTTTATTCGTTCCCTCTGTCCCTGTTCTTAAATCTGTGGT
CAGTGTGCTGAAAAAGGAAACATTTCGCGCTGAAGGAGTTTATGCCGATGACCCTGACAGAAATGAAAAAGTGAACCGGT
TTAGGGAAAGTAAGCTTGAGGTGCTCGTGACAACAACGATTTTGGAAAGAGGAGTGACCGTCAAAAAAGCGCAGGTTGGA
GTATTGGGGGCAGAGTCGGCGGTTTTTACCGAAAGCGCCCTCGTCCAAATGGCGGGAAGAGCCGGCAGGCATCCCGAGCA
CACAGATGGAGACGTCTGTTTCTTTCATTACGGCAGGACAAAGTCGATGAATGCGGCACGACGTCATATTCAAAACATGA
ATAAAATGTCTAAAAAGGAAATGTTGATTGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(122-269)

Helicase conserved C-terminal domain (Helicase_C)

(323-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

56.332

98.707

0.556

Multiple sequence alignment