Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   D9Y32_RS09425 Genome accession   NZ_CP033218
Coordinates   1862149..1862838 (+) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus licheniformis strain TCCC 11148     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1857149..1867838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9Y32_RS09400 (D9Y32_09410) - 1857324..1858388 (+) 1065 WP_003185739.1 glycosyltransferase family 4 protein -
  D9Y32_RS09405 (D9Y32_09415) - 1858508..1858882 (+) 375 WP_003185738.1 hypothetical protein -
  D9Y32_RS09410 (D9Y32_09420) - 1858967..1860043 (-) 1077 WP_003185737.1 LCP family protein -
  D9Y32_RS09415 (D9Y32_09425) - 1860058..1860696 (-) 639 WP_142782350.1 YigZ family protein -
  D9Y32_RS09420 (D9Y32_09430) degS 1860910..1862067 (+) 1158 WP_003185733.1 histidine kinase Regulator
  D9Y32_RS09425 (D9Y32_09435) degU 1862149..1862838 (+) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  D9Y32_RS09430 (D9Y32_09440) - 1862958..1863800 (+) 843 WP_003185726.1 DegV family protein -
  D9Y32_RS09435 (D9Y32_09445) comFA 1863921..1865315 (+) 1395 WP_003185720.1 DEAD/DEAH box helicase Machinery gene
  D9Y32_RS09440 (D9Y32_09450) - 1865370..1865654 (+) 285 WP_003185718.1 late competence development ComFB family protein -
  D9Y32_RS09445 (D9Y32_09455) comFC 1865611..1866345 (+) 735 WP_011198352.1 amidophosphoribosyltransferase Machinery gene
  D9Y32_RS09450 (D9Y32_09460) - 1866404..1866823 (+) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  D9Y32_RS09455 (D9Y32_09465) flgM 1866903..1867169 (+) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  D9Y32_RS09460 (D9Y32_09470) - 1867188..1867664 (+) 477 WP_003185711.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=322715 D9Y32_RS09425 WP_003185730.1 1862149..1862838(+) (degU) [Bacillus licheniformis strain TCCC 11148]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=322715 D9Y32_RS09425 WP_003185730.1 1862149..1862838(+) (degU) [Bacillus licheniformis strain TCCC 11148]
GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGAAGGTGTCAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCCGAAGGAGACGACGGAGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCTGATGTTGTTA
TCATGGATATTAATATGCCGAATGTGAACGGAGTAGAAGCGACAAAACAACTGGTCGACTTGTATCCGGAATCAAAGGTT
ATTATTTTATCCATCCATGATGACGAAAACTATGTTACACATGCATTAAAAACAGGAGCCCGGGGCTATCTGCTGAAAGA
AATGGATGCCGATACGCTGATCGAAGCCGTGAAAGTAGTAGCTGAAGGCGGATCTTATCTGCATCCTAAGGTTACACACA
ATCTTGTGAATGAATTCCGCCGTCTTGCAACAAGCGGTGTATCATCTCACGCTCAGCATGAGGTGTATCCGGAAATCCGG
AGACCTCTTCACATTCTCACAAGAAGGGAATGCGAGGTACTGCAGATGCTGGCGGATGGAAAAAGCAACCGCGGAATCGG
CGAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCATGTCAGCAACATCCTTCAAAAAATGAATGTAAACGACAGAA
CGCAGGCTGTTGTTGTAGCCATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987

Multiple sequence alignment