Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   FGC38_RS19575 Genome accession   NZ_CP040643
Coordinates   3980974..3981564 (-) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain BE104     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3975974..3986564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGC38_RS19560 (FGC38_19560) uhpT 3976614..3978005 (-) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -
  FGC38_RS19565 (FGC38_19565) uhpC 3978143..3979462 (-) 1320 WP_000936566.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  FGC38_RS19570 (FGC38_19570) uhpB 3979472..3980974 (-) 1503 WP_001295243.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  FGC38_RS19575 (FGC38_19575) letA 3980974..3981564 (-) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  FGC38_RS19580 (FGC38_19580) ilvN 3981640..3981930 (-) 291 WP_001181706.1 acetolactate synthase small subunit -
  FGC38_RS19585 (FGC38_19585) ilvB 3981934..3983622 (-) 1689 WP_000168475.1 acetolactate synthase large subunit -
  FGC38_RS19590 (FGC38_19590) ivbL 3983728..3983826 (-) 99 WP_001300753.1 ilvB operon leader peptide IvbL -
  FGC38_RS19595 (FGC38_19595) tisB 3984391..3984480 (+) 90 WP_001054909.1 type I toxin-antitoxin system toxin TisB -
  FGC38_RS23600 ysdE 3984604..3984678 (-) 75 WP_211180519.1 protein YsdE -
  FGC38_RS19600 (FGC38_19600) emrD 3984760..3985944 (+) 1185 WP_000828746.1 multidrug efflux MFS transporter EmrD -
  FGC38_RS19605 (FGC38_19605) yidF 3985952..3986449 (-) 498 WP_000148061.1 radical SAM protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=322651 FGC38_RS19575 WP_000633668.1 3980974..3981564(-) (letA) [Escherichia coli strain BE104]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=322651 FGC38_RS19575 WP_000633668.1 3980974..3981564(-) (letA) [Escherichia coli strain BE104]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACGATTATGCTCTCCGTT
CACGACAGTCCTGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCACGCGGCTTTCTTTCCAAACGCTGTAGCCCGGATGA
ACTCATTGCTGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GTCAGGACCCGCTAACCAAACGTGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTAGA
GCTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378