Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ECIAI39_RS16985 Genome accession   NC_011750
Coordinates   3524844..3525824 (-) Length   326 a.a.
NCBI ID   WP_001355637.1    Uniprot ID   A0A8T5WCU8
Organism   Escherichia coli IAI39     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3519844..3530824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECIAI39_RS16955 (ECIAI39_3362) yggI 3520508..3521005 (+) 498 WP_000858396.1 SprT family zinc-dependent metalloprotease -
  ECIAI39_RS16960 (ECIAI39_3363) endA 3521100..3521807 (+) 708 WP_000286500.1 deoxyribonuclease I -
  ECIAI39_RS16965 (ECIAI39_3364) rsmE 3521887..3522618 (+) 732 WP_001300912.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  ECIAI39_RS16970 (ECIAI39_3365) gshB 3522631..3523581 (+) 951 WP_000593266.1 glutathione synthase -
  ECIAI39_RS16975 (ECIAI39_3366) yqgE 3523690..3524253 (+) 564 WP_001355636.1 YqgE/AlgH family protein -
  ECIAI39_RS16980 (ECIAI39_3367) ruvX 3524253..3524669 (+) 417 WP_000017108.1 Holliday junction resolvase RuvX -
  ECIAI39_RS16985 (ECIAI39_3368) pilT 3524844..3525824 (-) 981 WP_001355637.1 type IV pilus twitching motility protein PilT Machinery gene
  ECIAI39_RS16990 (ECIAI39_3369) yggS 3525842..3526546 (+) 705 WP_000997795.1 pyridoxal phosphate homeostasis protein -
  ECIAI39_RS16995 (ECIAI39_3370) yggT 3526564..3527130 (+) 567 WP_001094835.1 osmotic shock tolerance protein YggT -
  ECIAI39_RS17000 (ECIAI39_3371) yggU 3527127..3527417 (+) 291 WP_001277222.1 DUF167 family protein YggU -
  ECIAI39_RS17005 (ECIAI39_3372) rdgB 3527425..3528018 (+) 594 WP_001174736.1 XTP/dITP diphosphatase -
  ECIAI39_RS17010 (ECIAI39_3373) hemW 3528011..3529147 (+) 1137 WP_000239941.1 radical SAM family heme chaperone HemW -
  ECIAI39_RS17015 (ECIAI39_3374) - 3529460..3530446 (+) 987 WP_000784004.1 TRAP transporter substrate-binding protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36002.22 Da        Isoelectric Point: 5.7980

>NTDB_id=32262 ECIAI39_RS16985 WP_001355637.1 3524844..3525824(-) (pilT) [Escherichia coli IAI39]
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRTILLENGQLDFAVSLAENQRLRG
SAFAQRQGISLALRLLPSHCPQLEQLGAPLILPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMLTFQQSYQQR
VGEGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=32262 ECIAI39_RS16985 WP_001355637.1 3524844..3525824(-) (pilT) [Escherichia coli IAI39]
ATGAATATGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACG
ATGGCGTATTCGCGGGCGAATGGAAGCTGCGCCGTTTGATGCGCCGGACGTCGAAGAGCTACTGCGGGAGTGGCTGGATG
ACGATCAGCGGACAATATTGCTGGAGAATGGTCAGCTGGATTTTGCTGTGTCGCTGGCGGAAAACCAGCGGTTGCGTGGC
AGTGCGTTCGCGCAACGGCAAGGTATTTCTCTGGCATTACGGTTGTTACCTTCGCACTGTCCACAGCTCGAACAGCTTGG
TGCGCCACTGATATTGCCGGAATTACTCAAGAGCGAGAATGGCCTGATTCTGGTGACGGGGGCGACGGGGAGTGGTAAAT
CTACCACGCTGGCGGCGATGGTTGGCTATCTTAATCAACATGCCGATGCGCATATTCTGACGCTGGAAGATCCTGTTGAA
TATCTCTATGCCAGCCAGCGATGTTTGATCCAGCAGCGGGAGATTGGTTTGCACTGTATGACGTTCGCATCGGGATTGCG
TGCCGCATTGCGGGAAGATCCCGATGTGATTTTGCTCGGAGAGCTACGTGACAGCGAGACAATCCGTCTGGCGCTTACGG
CGGCAGAAACCGGGCATTTGGTGCTGGCAACATTACATACACGTGGTGCCGCGCAGGCAGTTGAGCGACTGGTAGATTCA
TTTCCGGCGCAGGAAAAAGATCCCGTACGTAATCAACTGGCGGGTAGTTTACGGGCAGTGCTGTCACAAAAGCTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGCTGTTTGAATTACTGATTAACACTCCCGCGGTGGGGAATTTGATTCGCGAAGGGA
AAACGCACCAGTTGCCGCATGTTATTCAAACCGGGCAGCAGGTGGGGATGTTAACGTTTCAGCAGAGTTATCAGCAGCGG
GTGGGGGAAGGACGTTTGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(63-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.847

100

0.5
  pilT Vibrio cholerae strain A1552

49.847

100

0.5
  pilT Neisseria meningitidis 8013

49.085

100

0.494
  pilT Neisseria gonorrhoeae MS11

48.78

100

0.491
  pilT Acinetobacter baylyi ADP1

47.095

100

0.472
  pilT Acinetobacter baumannii strain A118

46.789

100

0.469
  pilT Acinetobacter baumannii D1279779

46.789

100

0.469
  pilT Acinetobacter nosocomialis M2

46.789

100

0.469
  pilT Pseudomonas stutzeri DSM 10701

46.177

100

0.463
  pilT Pseudomonas aeruginosa PAK

45.872

100

0.46
  pilT Legionella pneumophila strain Lp02

45.26

100

0.454
  pilT Legionella pneumophila strain ERS1305867

45.26

100

0.454
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

40.063

97.239

0.39
  pilU Pseudomonas stutzeri DSM 10701

37.273

100

0.377
  pilB Legionella pneumophila strain ERS1305867

31.152

100

0.365
  pilU Acinetobacter baylyi ADP1

36.646

98.773

0.362

Multiple sequence alignment