Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   FC605_RS14995 Genome accession   NZ_CP040528
Coordinates   2894688..2895692 (-) Length   334 a.a.
NCBI ID   WP_080529669.1    Uniprot ID   -
Organism   Bacillus subtilis strain PR10     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 2889688..2900692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FC605_RS14970 (FC605_14970) acuA 2890615..2891247 (+) 633 WP_003229296.1 acetoin utilization protein acetyltransferase AcuA -
  FC605_RS14975 (FC605_14975) acuB 2891274..2891918 (+) 645 WP_003229294.1 acetoin utilization AcuB family protein -
  FC605_RS14980 (FC605_14980) acuC 2891915..2893078 (+) 1164 WP_015251447.1 acetoin utilization protein AcuC -
  FC605_RS14985 (FC605_14985) motS 2893089..2893817 (-) 729 WP_080529668.1 flagellar motor protein MotS -
  FC605_RS14990 (FC605_14990) motP 2893807..2894625 (-) 819 WP_014477672.1 flagellar motor protein MotP -
  FC605_RS14995 (FC605_14995) ccpA 2894688..2895692 (-) 1005 WP_080529669.1 catabolite control protein A Regulator
  FC605_RS15000 (FC605_15000) aroX 2895968..2897044 (-) 1077 WP_003223454.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  FC605_RS15005 (FC605_15005) ytxJ 2897281..2897607 (-) 327 WP_003229280.1 bacillithiol system redox-active protein YtxJ -
  FC605_RS15010 (FC605_15010) ytxH 2897631..2898086 (-) 456 WP_004398549.1 YtxH domain-containing protein -
  FC605_RS15015 (FC605_15015) ytxG 2898117..2898539 (-) 423 WP_003229276.1 DUF948 domain-containing protein -
  FC605_RS15020 (FC605_15020) murC 2898701..2899999 (-) 1299 WP_003229274.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 36939.35 Da        Isoelectric Point: 5.1356

>NTDB_id=321957 FC605_RS14995 WP_080529669.1 2894688..2895692(-) (ccpA) [Bacillus subtilis strain PR10]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTNIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=321957 FC605_RS14995 WP_080529669.1 2894688..2895692(-) (ccpA) [Bacillus subtilis strain PR10]
ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGAGAAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGGCTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCG
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAGCT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCTCCAGTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAAACATCGCGTTCGTTTCCGGACC
AATGGCAGAACCGATCAACCGTTCGAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTGGGCATTATCCATGCTGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGTTTTGATAATACAAGATTAAGCCTTATGGTTCGTCCGCAGCTGTCAACAGTTGTTCAGC
CGACATACGATATTGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATAGAGCTAAGAAAGTCAACCAAGTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539

  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503