Detailed information    

insolico Bioinformatically predicted

Overview


Name   braR   Type   Regulator
Locus tag   GALLO_RS05725 Genome accession   NC_013798
Coordinates   1153709..1154371 (-) Length   220 a.a.
NCBI ID   WP_012961975.1    Uniprot ID   -
Organism   Streptococcus gallolyticus UCN34     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1148709..1159371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GALLO_RS05705 (GALLO_1084) - 1149123..1150508 (+) 1386 WP_012961973.1 ABC transporter ATP-binding protein -
  GALLO_RS05710 (GALLO_1085) xerS 1150827..1151897 (+) 1071 WP_012961974.1 tyrosine recombinase XerS Machinery gene
  GALLO_RS05715 (GALLO_1086) - 1152001..1152681 (-) 681 WP_009854191.1 helix-turn-helix transcriptional regulator -
  GALLO_RS05720 (GALLO_1087) - 1152765..1153712 (-) 948 WP_009854192.1 sensor histidine kinase -
  GALLO_RS05725 (GALLO_1088) braR 1153709..1154371 (-) 663 WP_012961975.1 response regulator transcription factor Regulator
  GALLO_RS05730 (GALLO_1089) - 1154459..1156438 (-) 1980 WP_009854194.1 FtsX-like permease family protein -
  GALLO_RS05735 (GALLO_1090) - 1156440..1157192 (-) 753 WP_009854195.1 ABC transporter ATP-binding protein -
  GALLO_RS05740 (GALLO_1091) - 1157688..1158518 (-) 831 WP_009854197.1 sugar phosphate isomerase/epimerase family protein -

Sequence


Protein


Download         Length: 220 a.a.        Molecular weight: 25434.10 Da        Isoelectric Point: 4.8371

>NTDB_id=32193 GALLO_RS05725 WP_012961975.1 1153709..1154371(-) (braR) [Streptococcus gallolyticus UCN34]
MKQGKIYIVEDDETIVKLLKQHLSQTYDVFSVTNFRAIKQEVEEIKPDLILIDITLPYFNGFYWTTEIRKTMTLPIIFIS
SSDDEMDTVMALNMGGDDFVSKPFSLTILDAKISAFLRRAYQFTSDNYQLDQFSLSRDGILSNGDDHITLSPTENKILAV
LFEHQNQVVPKEELLEKLWENESFIDQNTLSVNITRLRKKTQPLGFDRIHTVRGVGYLLK

Nucleotide


Download         Length: 663 bp        

>NTDB_id=32193 GALLO_RS05725 WP_012961975.1 1153709..1154371(-) (braR) [Streptococcus gallolyticus UCN34]
ATGAAACAAGGAAAGATTTATATTGTCGAGGACGATGAAACTATCGTTAAACTTTTAAAACAACATCTTAGTCAAACTTA
TGATGTCTTTAGTGTCACTAATTTTCGAGCTATCAAGCAGGAAGTCGAAGAAATCAAACCTGACCTTATCCTGATTGATA
TCACGTTGCCGTATTTTAATGGTTTTTATTGGACAACAGAAATTCGTAAAACCATGACATTGCCGATTATTTTTATCTCA
TCTAGTGATGATGAAATGGATACTGTCATGGCACTTAACATGGGAGGGGATGATTTTGTGTCAAAACCATTTTCTCTAAC
GATTTTAGACGCCAAAATTTCAGCCTTTTTAAGACGTGCTTACCAGTTTACCTCGGATAATTACCAATTGGACCAGTTTT
CTCTGTCGCGTGACGGAATTTTATCAAACGGTGACGACCATATCACCTTATCTCCGACAGAAAATAAGATTTTAGCGGTT
CTCTTTGAACATCAAAATCAAGTCGTGCCCAAAGAGGAATTACTCGAGAAACTTTGGGAAAATGAAAGTTTCATTGACCA
AAATACCCTTAGCGTTAACATAACACGACTGCGCAAGAAAACACAACCATTAGGTTTTGATCGTATTCACACCGTGAGAG
GAGTTGGCTACCTTCTAAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

46.33

99.091

0.459

  vicR Streptococcus mutans UA159

34.322

100

0.368


Multiple sequence alignment