Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   GALLO_RS05710 Genome accession   NC_013798
Coordinates   1150827..1151897 (+) Length   356 a.a.
NCBI ID   WP_012961974.1    Uniprot ID   -
Organism   Streptococcus gallolyticus UCN34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1145827..1156897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GALLO_RS05690 (GALLO_1081) - 1146024..1147757 (+) 1734 WP_012961970.1 ABC transporter ATP-binding protein -
  GALLO_RS05695 (GALLO_1082) - 1147772..1148359 (+) 588 WP_012961971.1 MptD family putative ECF transporter S component -
  GALLO_RS05700 (GALLO_1083) - 1148432..1149130 (+) 699 WP_012961972.1 energy-coupling factor transporter transmembrane component T -
  GALLO_RS05705 (GALLO_1084) - 1149123..1150508 (+) 1386 WP_012961973.1 ABC transporter ATP-binding protein -
  GALLO_RS05710 (GALLO_1085) xerS 1150827..1151897 (+) 1071 WP_012961974.1 tyrosine recombinase XerS Machinery gene
  GALLO_RS05715 (GALLO_1086) - 1152001..1152681 (-) 681 WP_009854191.1 helix-turn-helix transcriptional regulator -
  GALLO_RS05720 (GALLO_1087) - 1152765..1153712 (-) 948 WP_009854192.1 sensor histidine kinase -
  GALLO_RS05725 (GALLO_1088) braR 1153709..1154371 (-) 663 WP_012961975.1 response regulator transcription factor Regulator
  GALLO_RS05730 (GALLO_1089) - 1154459..1156438 (-) 1980 WP_009854194.1 FtsX-like permease family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41320.34 Da        Isoelectric Point: 9.3121

>NTDB_id=32192 GALLO_RS05710 WP_012961974.1 1150827..1151897(+) (xerS) [Streptococcus gallolyticus UCN34]
MKREKLLEKIDELKEIMPWYVLDYYQSKLSVPYSFTTLYEYLKEYRRFFEWLLDSGISDVTKIADVELTTLEHLSKKDME
SFILYLRERPSLNTYSTKQGVSQTTINRTLSALSSLFKYLTEEVEDENGEPYFYRNVMKKIATKKKKETLAARAENIKGK
LFLGDETMAFIDYIDTEYQNKLSHRALSSFQKNKERDLALIALLLASGVRLSEAVNLDLKDLNLNMMVIEVTRKGGKRDS
VNVANFAKPYLEAYLQIRAPRYKAEKQDQALFLTEYRGVPNRIDASSVEKLVAKYSQDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=32192 GALLO_RS05710 WP_012961974.1 1150827..1151897(+) (xerS) [Streptococcus gallolyticus UCN34]
ATGAAACGTGAAAAATTACTTGAAAAAATTGATGAACTTAAAGAAATAATGCCTTGGTACGTCTTAGACTATTACCAATC
AAAACTTTCGGTTCCTTATAGTTTCACAACTTTATATGAATACTTAAAAGAATATCGCCGATTTTTCGAATGGCTTTTGG
ATTCTGGAATTTCAGATGTTACTAAAATTGCTGACGTTGAGTTAACAACCCTGGAACATCTTTCTAAAAAAGACATGGAA
TCATTTATCCTTTATCTGCGTGAACGTCCTTCTTTGAACACTTATTCAACAAAACAAGGTGTCTCACAAACAACGATTAA
TCGGACGTTATCAGCACTTTCAAGTCTGTTTAAATATCTAACAGAAGAGGTCGAAGATGAAAATGGTGAGCCCTACTTCT
ATCGAAATGTCATGAAAAAAATCGCTACTAAGAAGAAAAAAGAAACGCTGGCAGCTCGAGCTGAAAATATAAAAGGCAAA
CTTTTCCTAGGTGACGAGACCATGGCATTTATCGACTATATCGATACAGAGTATCAAAATAAGCTCTCTCACCGCGCCCT
ATCCTCCTTCCAAAAGAATAAGGAGCGTGATTTAGCGCTTATTGCTCTTCTGCTTGCCTCTGGTGTCCGTCTTTCAGAAG
CTGTTAATCTTGATTTGAAAGACTTAAACCTTAATATGATGGTTATCGAAGTCACTCGTAAAGGTGGAAAACGTGATTCT
GTCAATGTTGCTAACTTTGCTAAGCCTTATTTAGAAGCTTATTTGCAAATCAGAGCGCCTCGCTATAAGGCGGAAAAACA
AGACCAAGCTCTCTTTTTAACAGAATATCGCGGTGTTCCTAACCGTATTGATGCTTCAAGCGTTGAAAAGTTAGTTGCTA
AATACTCTCAAGATTTCAAAGTTCGTGTAACACCCCACAAACTGCGCCACACACTTGCAACACGTCTTTACGATGCTACT
AAATCACAAGTCCTAGTTAGCCACCAATTAGGACATGCCAGCACACAAGTTACCGACTTATACACCCATATTGTCAACGA
CGAACAAAAAAATGCCTTAGATAATCTTTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(191-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834

Multiple sequence alignment