Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   D0856_RS17245 Genome accession   NZ_CP033144
Coordinates   3555582..3556214 (-) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio owensii strain V180403     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3550582..3561214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0856_RS17230 (D0856_17230) astA 3551795..3552814 (+) 1020 WP_005438349.1 arginine N-succinyltransferase -
  D0856_RS17235 (D0856_17235) astD 3552843..3554300 (+) 1458 WP_122068721.1 succinylglutamate-semialdehyde dehydrogenase -
  D0856_RS17240 (D0856_17240) - 3554565..3555356 (+) 792 WP_039985043.1 DUF1338 domain-containing protein -
  D0856_RS17245 (D0856_17245) crp 3555582..3556214 (-) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  D0856_RS17250 (D0856_17250) - 3556454..3557323 (-) 870 WP_005438358.1 phosphoribulokinase -
  D0856_RS17255 (D0856_17255) - 3557448..3557660 (-) 213 WP_005432763.1 YheU family protein -
  D0856_RS17260 (D0856_17260) - 3557726..3558733 (-) 1008 WP_122068723.1 hydrolase -
  D0856_RS17265 (D0856_17265) - 3558834..3559313 (-) 480 WP_009705493.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=321842 D0856_RS17245 WP_005381432.1 3555582..3556214(-) (crp) [Vibrio owensii strain V180403]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=321842 D0856_RS17245 WP_005381432.1 3555582..3556214(-) (crp) [Vibrio owensii strain V180403]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAGGGCGACTTCATTGGTGAACTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGCGCTAAATCTCCTTGTGAAGTGGCTGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTTAACCCAGACATCCTAATGCGTCTTTCTGCGCAGATGGCTCGTCGTCTACAAGTTACTAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACTCTTCTGAACCTTGCTAAACAGCCAGATGCGATGACGCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCGCACGGTAAAACTATCGTTGTTTACGGGACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment