Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FE252_RS08310 Genome accession   NZ_CP040456
Coordinates   1369546..1370283 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain UPEC132     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1364546..1375283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE252_RS08285 tyrA 1364922..1366043 (+) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  FE252_RS08290 pheA 1366086..1367246 (-) 1161 WP_000200107.1 bifunctional chorismate mutase/prephenate dehydratase -
  FE252_RS08295 pheL 1367345..1367392 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  FE252_RS08300 raiA 1367496..1367837 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  FE252_RS08305 - 1368150..1369496 (+) 1347 WP_000483767.1 IS4-like element IS4 family transposase -
  FE252_RS08310 comL 1369546..1370283 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  FE252_RS08315 rluD 1370418..1371398 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FE252_RS08320 yfiH 1371395..1372126 (+) 732 WP_000040137.1 purine nucleoside phosphorylase YfiH -
  FE252_RS08325 clpC 1372256..1374829 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=321782 FE252_RS08310 WP_000197686.1 1369546..1370283(-) (comL) [Escherichia coli strain UPEC132]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=321782 FE252_RS08310 WP_000197686.1 1369546..1370283(-) (comL) [Escherichia coli strain UPEC132]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376