Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   D0871_RS03270 Genome accession   NZ_CP033141
Coordinates   622943..623986 (+) Length   347 a.a.
NCBI ID   WP_023623298.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 160807     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 617943..628986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0871_RS03255 (D0871_03255) rpoS 618546..619535 (+) 990 WP_005478537.1 RNA polymerase sigma factor RpoS Regulator
  D0871_RS03260 (D0871_03260) mutS 619614..622175 (-) 2562 WP_024702355.1 DNA mismatch repair protein MutS -
  D0871_RS03265 (D0871_03265) pncC 622260..622742 (+) 483 WP_021450025.1 nicotinamide-nucleotide amidase -
  D0871_RS03270 (D0871_03270) recA 622943..623986 (+) 1044 WP_023623298.1 recombinase RecA Machinery gene
  D0871_RS03275 (D0871_03275) recX 624109..624576 (+) 468 WP_005455548.1 recombination regulator RecX -
  D0871_RS03280 (D0871_03280) alaS 624719..627301 (+) 2583 WP_005455546.1 alanine--tRNA ligase -
  D0871_RS03285 (D0871_03285) - 627504..628691 (+) 1188 WP_005478552.1 aspartate kinase -
  D0871_RS03290 (D0871_03290) csrA 628784..628981 (+) 198 WP_004415691.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37462.94 Da        Isoelectric Point: 5.1850

>NTDB_id=321783 D0871_RS03270 WP_023623298.1 622943..623986(+) (recA) [Vibrio parahaemolyticus strain 160807]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGKANACNYLREHPEIAKTIDT
KLREMLLSPAQPEAPTAGEKPEQEEEF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=321783 D0871_RS03270 WP_023623298.1 622943..623986(+) (recA) [Vibrio parahaemolyticus strain 160807]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGCG
CCTTGGTGATAACCGCGCAATGGATGTAGAAACCATTTCAACGGGTTCGCTTTCTCTTGATATCGCTTTGGGTGCTGGTG
GTCTACCAATGGGGCGTATCGTAGAAATCTACGGTCCAGAATCTTCAGGTAAAACAACGCTAACTCTTGAGCTTATCGCT
GCTGCACAACGTGAAGGTAAAACTTGTGCGTTTATCGATGCTGAGCACGCGTTGGATCCTGTGTACGCTAAAAAGCTTGG
TGTTGATATTGATGCGCTATTGGTATCTCAGCCAGACACTGGTGAGCAAGCTCTAGAGATTTGTGATGCATTAGCTCGCT
CTGGTGCAATCGACGTAATGGTTGTTGACTCTGTTGCTGCTCTAACACCTAAAGCTGAGATCGAAGGTGAAATGGGCGAC
AGCCACATGGGTCTCCAAGCTCGTATGCTTTCTCAAGCAATGCGTAAGCTTACAGGTAACCTGAAACAGTCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCTGAAACGACTACTGGCGGTAATGCGC
TTAAGTTTTACGCTTCTGTTCGTTTAGATATCCGTCGTACTGGCGCAATCAAAGAAGGCGACGAAGTTGTAGGTAACGAA
ACGCGTATCAAAGTGGTTAAGAACAAGATTGCAGCACCATTTAAAGAAGCAAACACGCAAATCATGTATGGCCAAGGCTT
TAACCGTGAAGGTGAGTTGATTGACTTAGGCGTGAAGCACAAGCTAGTAGAAAAAGCGGGTGCTTGGTACAGCTACAATG
GCGATAAGATTGGTCAAGGTAAAGCAAACGCTTGTAACTACCTGCGTGAGCATCCAGAAATCGCGAAAACAATCGATACC
AAACTGCGTGAAATGCTACTTTCTCCAGCTCAACCAGAAGCACCTACTGCCGGTGAGAAGCCTGAGCAAGAAGAAGAGTT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

95.745

94.813

0.908
  recA Vibrio cholerae O1 biovar El Tor strain E7946

95.745

94.813

0.908
  recA Pseudomonas stutzeri DSM 10701

72.941

97.983

0.715
  recA Acinetobacter baylyi ADP1

72.012

98.847

0.712
  recA Acinetobacter baumannii D1279779

74.695

94.524

0.706
  recA Glaesserella parasuis strain SC1401

68.103

100

0.683
  recA Neisseria gonorrhoeae MS11

66.189

100

0.666
  recA Neisseria gonorrhoeae MS11

66.189

100

0.666
  recA Neisseria gonorrhoeae strain FA1090

66.189

100

0.666
  recA Ralstonia pseudosolanacearum GMI1000

71.383

89.625

0.64
  recA Helicobacter pylori 26695

60.294

97.983

0.591
  recA Helicobacter pylori strain NCTC11637

62.08

94.236

0.585
  recA Streptococcus pneumoniae Rx1

62.848

93.084

0.585
  recA Streptococcus pneumoniae R6

62.848

93.084

0.585
  recA Streptococcus pneumoniae D39

62.848

93.084

0.585
  recA Streptococcus pneumoniae TIGR4

62.848

93.084

0.585
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

91.931

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

92.507

0.579
  recA Streptococcus mitis NCTC 12261

61.92

93.084

0.576
  recA Streptococcus pyogenes NZ131

61.231

93.66

0.573
  recA Streptococcus mitis SK321

61.61

93.084

0.573
  recA Streptococcus mutans UA159

60.923

93.66

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

92.507

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.215

95.389

0.565
  recA Lactococcus lactis subsp. cremoris KW2

60.681

93.084

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

60.748

92.507

0.562

Multiple sequence alignment