Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | D0812_RS01725 | Genome accession | NZ_CP033137 |
| Coordinates | 349217..349795 (+) | Length | 192 a.a. |
| NCBI ID | WP_054824716.1 | Uniprot ID | A0AAP9K8V0 |
| Organism | Vibrio owensii strain 1700302 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 344217..354795
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0812_RS01710 (D0812_01710) | oxyR | 344493..345401 (+) | 909 | WP_033005806.1 | DNA-binding transcriptional regulator OxyR | - |
| D0812_RS01715 (D0812_01715) | - | 345468..348038 (-) | 2571 | WP_054824718.1 | PBP1A family penicillin-binding protein | - |
| D0812_RS01720 (D0812_01720) | pilM | 348217..349233 (+) | 1017 | WP_054824717.1 | type IV pilus assembly protein PilM | Machinery gene |
| D0812_RS01725 (D0812_01725) | pilN | 349217..349795 (+) | 579 | WP_054824716.1 | PilN domain-containing protein | Machinery gene |
| D0812_RS01730 (D0812_01730) | pilO | 349788..350381 (+) | 594 | WP_009705519.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| D0812_RS01735 (D0812_01735) | pilP | 350371..350886 (+) | 516 | WP_005438430.1 | pilus assembly protein PilP | Machinery gene |
| D0812_RS01740 (D0812_01740) | pilQ | 350921..352669 (+) | 1749 | WP_045412013.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| D0812_RS01745 (D0812_01745) | aroK | 352859..353377 (+) | 519 | WP_005438434.1 | shikimate kinase AroK | - |
| D0812_RS01750 (D0812_01750) | aroB | 353409..354509 (+) | 1101 | WP_054824715.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22259.69 Da Isoelectric Point: 9.4720
>NTDB_id=321725 D0812_RS01725 WP_054824716.1 349217..349795(+) (pilN) [Vibrio owensii strain 1700302]
MLHHINLLAWRENQREEHRRRFIGLIVLGVIAALGVQWGIGKYYQYQQDQQQQRLDYLAHYISQLDKRIEAMKIAEQEHG
KILERLKIVEGLQNGRNKTTEFMNLMPSVIPEGVYVDKIKMNDYEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFKGASIKEGGKQHG
MLHHINLLAWRENQREEHRRRFIGLIVLGVIAALGVQWGIGKYYQYQQDQQQQRLDYLAHYISQLDKRIEAMKIAEQEHG
KILERLKIVEGLQNGRNKTTEFMNLMPSVIPEGVYVDKIKMNDYEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFKGASIKEGGKQHG
Nucleotide
Download Length: 579 bp
>NTDB_id=321725 D0812_RS01725 WP_054824716.1 349217..349795(+) (pilN) [Vibrio owensii strain 1700302]
ATGCTGCATCACATTAACCTCCTCGCTTGGCGCGAAAATCAACGTGAAGAACATCGTCGACGTTTTATTGGTTTGATTGT
TCTTGGTGTGATTGCTGCGCTGGGCGTGCAGTGGGGGATCGGTAAGTACTACCAATACCAACAAGACCAGCAACAACAGC
GCTTAGACTATTTAGCTCACTATATATCTCAGCTTGATAAGCGAATTGAAGCAATGAAGATTGCTGAGCAAGAGCACGGC
AAGATCTTAGAACGCTTAAAGATTGTCGAAGGGTTACAAAACGGACGCAATAAAACCACTGAGTTCATGAACTTGATGCC
ATCAGTGATTCCAGAAGGCGTGTATGTCGACAAGATTAAGATGAATGACTACGAAATCGAGATCTCAGGGATTTCAGATA
GTACGCCACGTCTCGCGACGATGCTCGATAACATGGAGCGTTCAGCAAAATTGTTAGACGTCGAGATGCACTCCATTGTC
CATGGTAAAGCCCGTTTCGGTAAAGAGTTTCAGACGTTCAAAGTCTCCTTCATGTTTAAAGGTGCCTCTATAAAAGAAGG
AGGTAAACAGCATGGTTAA
ATGCTGCATCACATTAACCTCCTCGCTTGGCGCGAAAATCAACGTGAAGAACATCGTCGACGTTTTATTGGTTTGATTGT
TCTTGGTGTGATTGCTGCGCTGGGCGTGCAGTGGGGGATCGGTAAGTACTACCAATACCAACAAGACCAGCAACAACAGC
GCTTAGACTATTTAGCTCACTATATATCTCAGCTTGATAAGCGAATTGAAGCAATGAAGATTGCTGAGCAAGAGCACGGC
AAGATCTTAGAACGCTTAAAGATTGTCGAAGGGTTACAAAACGGACGCAATAAAACCACTGAGTTCATGAACTTGATGCC
ATCAGTGATTCCAGAAGGCGTGTATGTCGACAAGATTAAGATGAATGACTACGAAATCGAGATCTCAGGGATTTCAGATA
GTACGCCACGTCTCGCGACGATGCTCGATAACATGGAGCGTTCAGCAAAATTGTTAGACGTCGAGATGCACTCCATTGTC
CATGGTAAAGCCCGTTTCGGTAAAGAGTTTCAGACGTTCAAAGTCTCCTTCATGTTTAAAGGTGCCTCTATAAAAGAAGG
AGGTAAACAGCATGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
94.792 |
100 |
0.948 |
| pilN | Vibrio cholerae strain A1552 |
59.375 |
100 |
0.594 |