Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CDG68_RS14055 Genome accession   NZ_CP033133
Coordinates   2322038..2322748 (+) Length   236 a.a.
NCBI ID   WP_068974228.1    Uniprot ID   -
Organism   Acinetobacter wuhouensis strain WCHAW010062     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2317038..2327748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG68_RS14035 (CDG68_14040) - 2317384..2318316 (+) 933 WP_068974224.1 family 2A encapsulin nanocompartment shell protein -
  CDG68_RS14040 (CDG68_14045) - 2318291..2320237 (+) 1947 WP_087552035.1 family 2A encapsulin nanocompartment cargo protein cysteine desulfurase -
  CDG68_RS14045 (CDG68_14050) - 2320480..2321280 (+) 801 WP_087552034.1 M23 family metallopeptidase -
  CDG68_RS14050 (CDG68_14055) - 2321464..2321886 (-) 423 WP_087552033.1 OsmC family protein -
  CDG68_RS14055 (CDG68_14060) crp 2322038..2322748 (+) 711 WP_068974228.1 cAMP-activated global transcriptional regulator CRP Regulator
  CDG68_RS14060 (CDG68_14065) - 2323064..2324113 (+) 1050 WP_087552032.1 NADP(H)-dependent aldo-keto reductase -
  CDG68_RS14065 (CDG68_14070) - 2324378..2325163 (-) 786 WP_068974230.1 M48 family metallopeptidase -
  CDG68_RS14070 (CDG68_14075) - 2325276..2325581 (-) 306 WP_068974231.1 hypothetical protein -
  CDG68_RS14075 (CDG68_14080) - 2325743..2327062 (-) 1320 WP_087552031.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26534.10 Da        Isoelectric Point: 4.6785

>NTDB_id=321657 CDG68_RS14055 WP_068974228.1 2322038..2322748(+) (crp) [Acinetobacter wuhouensis strain WCHAW010062]
MSSNFAQLSTDALSPGQLPESVKALLKRAHINRFPKRSTIVDAGSESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEQNPQRTAEVRTRDVCEIAEISYDNFHEISKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEESKFSEDDADQDDE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=321657 CDG68_RS14055 WP_068974228.1 2322038..2322748(+) (crp) [Acinetobacter wuhouensis strain WCHAW010062]
ATGTCTTCTAATTTTGCACAACTTAGTACAGATGCTTTGTCTCCTGGTCAATTACCTGAGTCAGTCAAAGCTTTGCTCAA
AAGAGCCCACATCAATCGTTTTCCAAAACGTTCAACCATTGTTGATGCAGGTTCAGAGTCAAAATCTCTGTATTTAATTT
TAAAAGGTTCAGTTTCAATTATTTTACGTGAAGATGATGAGCGTGAAATCGTTGTTGCTTATTTGAACCCTGGGGATTTT
TTTGGGGAAATGGGATTATTTGAGCAAAATCCTCAACGTACTGCGGAAGTAAGAACGCGTGACGTTTGTGAAATTGCTGA
AATTTCTTATGACAATTTCCACGAAATCAGCAAACAATATCCAGATTTAAGCTACGCTGTTTTTGCTCAGCTTGTTCGCC
GTTTAAAGAACACAACACGTAAAGTAACTGACCTTGCATTTATCGATGTATCTGGTCGTATTGCGCGTTGTTTGATTGAC
CTTTCTGCTCAACCAGAAGCAATGATTCTCCCAAATGGTCGTCAAATCCGTATTACACGTCAAGAAATCGGTCGTATCGT
AGGCTGTTCACGTGAAATGGTCGGTCGTGTTCTTAAAACACTTGAAGAACAAGGTATGATTGAAACTGATGGTAAAGCTA
TTCTAATTTTTGATGCTTCTTTAGAAGAGTCTAAATTCTCTGAAGACGATGCAGATCAAGATGACGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

90.638

99.576

0.903
  crp Vibrio cholerae strain A1552

47.573

87.288

0.415
  crp Haemophilus influenzae Rd KW20

48.205

82.627

0.398

Multiple sequence alignment