Detailed information NTG0321627

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: EAO82_RS17670
• Genome accession: NZ_CP033116
• Coordinates: 3836879..3838228 (+)
• Length: 449 a.a.
• NCBI ID: WP_096345108.1
• Uniprot ID: A0AA91U4W5
• Organism: Halopseudomonas pelagia strain Kongs-67
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3831879..3843228

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EAO82_RS17650 (EAO82_17745)	rluD	3832600..3833559 (-)	960	WP_096345104.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
EAO82_RS17655 (EAO82_17750)	-	3833751..3834743 (+)	993	WP_096345105.1	outer membrane protein assembly factor BamD	-
EAO82_RS17660 (EAO82_17755)	-	3835001..3835237 (+)	237	WP_096345106.1	PP0621 family protein	-
EAO82_RS17665 (EAO82_17760)	pilS	3835218..3836807 (+)	1590	WP_096345107.1	two-component system sensor histidine kinase NtrB	Regulator
EAO82_RS17670 (EAO82_17765)	pilR	3836879..3838228 (+)	1350	WP_096345108.1	sigma-54-dependent transcriptional regulator	Regulator
EAO82_RS17675 (EAO82_17770)	thiO	3838225..3839334 (-)	1110	WP_231703371.1	glycine oxidase ThiO	-
EAO82_RS17680 (EAO82_17775)	mqo	3839540..3841024 (+)	1485	WP_096345272.1	malate dehydrogenase (quinone)	-
EAO82_RS17685 (EAO82_17780)	-	3841059..3841856 (-)	798	WP_096345109.1	substrate-binding periplasmic protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 49996.41 Da
• Isoelectric Point: 6.5092

>NTDB_id=321627 EAO82_RS17670 WP_096345108.1 3836879..3838228(+) (pilR) [Halopseudomonas pelagia strain Kongs-67]
MNSLTVLIIDDEPDIVELLEMTLQRMQVRTCSAATMSQALDKLGKQRFDLCLTDMRLPDGDGLTIVRHIQQHYPQTPVAM
ITAYGSLDTAISALKAGAFDFLTKPVNLQRLRELVSNALRLSLSNPEQNNVTEDEADPILGISPPIIQLRSQIAKLARSQ
APLYISGESGSGKELVARRIHALGARAEQPFVPVNCGAIPSELMESEFFGHKRGSFTGAIADKPGLFQAASGGTLFLDEV
ADLPMAMQVKLLRAIQEKAVRPLGTQQEEAVDIRLLCATHKDLAAEVAAGRFRQDLFYRINVIELRVPPLRERREDIPLL
TRHILARLAVRNEMPGSTVSPETLERLSNYRFPGNVRELENILERAFTLSEGQLIKTHDIHIASCASSQNQQPSLTQIDS
LEDYLDNIERTAITQALEETRWNKTAAAKRLGLTFRSLRYRLKKLGMED

Nucleotide

• Length: 1350 bp

>NTDB_id=321627 EAO82_RS17670 WP_096345108.1 3836879..3838228(+) (pilR) [Halopseudomonas pelagia strain Kongs-67]
ATGAATAGCCTTACGGTACTGATCATTGACGACGAACCGGATATCGTTGAACTGCTGGAAATGACGTTGCAGCGCATGCA
AGTACGCACCTGCAGCGCCGCTACCATGAGCCAGGCGCTGGATAAGCTCGGCAAGCAGCGGTTCGACCTGTGCCTGACCG
ACATGCGTTTGCCCGACGGCGACGGCCTGACGATTGTTCGGCATATCCAGCAGCATTATCCGCAGACCCCGGTCGCAATG
ATCACCGCCTACGGCAGCCTGGACACCGCCATCAGCGCCCTGAAAGCCGGCGCCTTTGACTTCCTGACCAAACCGGTGAA
CCTGCAACGCCTGCGCGAGCTGGTCAGCAATGCCCTGCGCCTGAGCCTGAGCAACCCCGAGCAAAACAACGTCACCGAGG
ATGAAGCTGACCCGATCCTCGGCATTTCACCGCCAATCATTCAGCTACGCTCGCAAATTGCCAAGCTGGCCCGCAGCCAG
GCACCGCTGTATATCAGTGGTGAGTCCGGTAGCGGCAAGGAGCTGGTGGCCAGACGCATTCATGCGCTGGGTGCCCGGGC
CGAACAGCCCTTTGTGCCAGTCAACTGCGGGGCAATTCCCTCCGAGTTGATGGAGAGCGAATTCTTTGGTCACAAACGCG
GCAGCTTTACTGGCGCCATCGCAGACAAGCCCGGGCTGTTTCAAGCGGCCTCAGGCGGCACTCTGTTTCTCGACGAGGTC
GCTGACCTGCCCATGGCCATGCAGGTGAAACTGTTACGCGCGATTCAGGAAAAGGCTGTGCGCCCACTAGGCACCCAGCA
GGAAGAAGCCGTGGATATCCGGCTGCTCTGTGCCACACATAAAGACCTGGCTGCCGAGGTGGCCGCCGGGCGTTTCCGCC
AGGATCTGTTTTATCGCATCAACGTGATCGAACTACGCGTGCCACCATTGCGCGAACGCCGCGAAGATATTCCGCTGCTT
ACCCGGCATATACTCGCCCGACTGGCGGTACGCAACGAAATGCCGGGGTCCACGGTCAGCCCGGAAACATTGGAGCGGCT
GAGCAATTACCGCTTTCCCGGCAATGTGCGGGAACTGGAGAACATCCTTGAGCGCGCCTTTACCTTGAGTGAAGGCCAGC
TGATCAAGACTCATGATATCCACATTGCGTCCTGCGCCAGCAGCCAGAATCAGCAGCCCTCGCTGACCCAGATTGATTCA
CTTGAGGATTACCTGGATAACATCGAGCGCACCGCCATTACCCAGGCACTGGAAGAAACCCGCTGGAACAAGACTGCGGC
GGCCAAACGCCTGGGGCTGACCTTTCGCTCGTTACGCTATCGGCTGAAAAAGCTCGGCATGGAAGACTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Response regulator receiver domain (Response_reg) (6-115)

• Sigma-54 interaction domain (Sigma54_activat) (140-305)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	71.269	100	0.713
pilR	Acinetobacter baumannii strain A118	50.108	100	0.514