Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   EAO82_RS17665 Genome accession   NZ_CP033116
Coordinates   3835218..3836807 (+) Length   529 a.a.
NCBI ID   WP_096345107.1    Uniprot ID   -
Organism   Halopseudomonas pelagia strain Kongs-67     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3830218..3841807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAO82_RS17645 (EAO82_17740) pgeF 3831869..3832603 (-) 735 WP_096345103.1 peptidoglycan editing factor PgeF -
  EAO82_RS17650 (EAO82_17745) rluD 3832600..3833559 (-) 960 WP_096345104.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EAO82_RS17655 (EAO82_17750) - 3833751..3834743 (+) 993 WP_096345105.1 outer membrane protein assembly factor BamD -
  EAO82_RS17660 (EAO82_17755) - 3835001..3835237 (+) 237 WP_096345106.1 PP0621 family protein -
  EAO82_RS17665 (EAO82_17760) pilS 3835218..3836807 (+) 1590 WP_096345107.1 two-component system sensor histidine kinase NtrB Regulator
  EAO82_RS17670 (EAO82_17765) pilR 3836879..3838228 (+) 1350 WP_096345108.1 sigma-54-dependent transcriptional regulator Regulator
  EAO82_RS17675 (EAO82_17770) thiO 3838225..3839334 (-) 1110 WP_231703371.1 glycine oxidase ThiO -
  EAO82_RS17680 (EAO82_17775) mqo 3839540..3841024 (+) 1485 WP_096345272.1 malate dehydrogenase (quinone) -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58841.07 Da        Isoelectric Point: 7.0762

>NTDB_id=321626 EAO82_RS17665 WP_096345107.1 3835218..3836807(+) (pilS) [Halopseudomonas pelagia strain Kongs-67]
MPGAMTEVIDYQRPRILRIYNIYRVILGFFLTVLTSGALREGLLELNNPQLYETASWFYLFINVLIALLLHQGKRDVYLF
VLSVLDIFLLGSIFYAAGGAGSGFGNLLLIPVAAGNILIHGRVGLLLAALASLVTIYLTFYLSLSTPGAVQSYLQVGVLG
GIYFAVALFVQRLSKRLRQSESLAQQQATSLASLEKLNQLIIQRMRTGIMVVGGKQRVLLANEAAAQMLGKPIIRGMDVD
DLAIGLAQRLRQWQNNPAIRTLPFHNHSGGAEITANFKPLPSDEGETVLVFLDDNTQVAQQAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLSESEQIPVQDKRLSEIIQQHSKRMNKVIETVLELSRRRPSEPQLIDLSLWLEHFAETFALSHPAT
DRLELEAGHNVMTRMDPNQLNQVLDNLCSNALRYSGAEGEHRSIWLKLYIHPESNLPILEVIDHGPGIPEEHLAHIFEPF
YTTETSGTGLGLYISRELCESNQARLEYEPLVPRGSCMRITFAHPRRLV

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=321626 EAO82_RS17665 WP_096345107.1 3835218..3836807(+) (pilS) [Halopseudomonas pelagia strain Kongs-67]
ATGCCGGGCGCCATGACTGAGGTCATCGATTACCAACGCCCGCGCATTCTGCGGATCTATAACATCTATCGAGTCATTCT
CGGTTTTTTTCTGACAGTGCTGACCAGCGGCGCGTTACGTGAAGGCCTGCTGGAACTGAACAACCCCCAGCTGTATGAAA
CAGCCAGTTGGTTTTACCTGTTTATCAACGTGCTTATCGCGCTGCTGCTGCATCAGGGCAAGCGCGATGTATACCTGTTC
GTGCTCTCGGTACTGGATATCTTTCTGCTCGGCAGTATTTTCTATGCGGCGGGCGGCGCCGGTAGTGGCTTCGGCAATCT
GCTGCTGATTCCGGTAGCAGCGGGCAACATCCTGATTCACGGGCGCGTGGGCCTGTTGCTGGCCGCACTGGCCAGCCTGG
TAACCATCTACCTGACTTTCTACCTGAGCCTGTCCACTCCCGGGGCGGTACAGAGTTATTTGCAGGTTGGGGTGTTGGGC
GGTATCTACTTCGCTGTCGCGCTTTTTGTACAGCGGTTGAGCAAACGCCTGCGTCAGTCCGAAAGCCTGGCGCAACAGCA
GGCCACCAGCCTTGCCAGCCTGGAGAAGCTCAATCAACTGATTATTCAGCGCATGCGCACGGGCATCATGGTCGTCGGCG
GCAAGCAGAGAGTCCTGCTCGCCAATGAAGCCGCTGCGCAAATGCTGGGTAAACCGATCATTCGCGGCATGGATGTAGAT
GACCTGGCCATTGGTTTGGCCCAGCGCTTGCGCCAGTGGCAGAACAACCCGGCCATTCGCACCCTGCCCTTCCACAATCA
CAGTGGCGGGGCCGAAATTACTGCAAACTTCAAACCCTTGCCCAGTGATGAAGGCGAGACGGTATTGGTGTTCCTCGACG
ACAATACTCAGGTGGCGCAGCAGGCGCAGCAGCTCAAACTCGCCTCTCTTGGCCGGCTCACGGCGAGCATCGCGCATGAG
ATTCGTAATCCGCTGGGGGCGATCAGCCATGCCGCCCAGTTGCTCAGCGAATCCGAGCAGATTCCTGTACAGGACAAACG
CCTGAGCGAAATTATTCAGCAGCATTCCAAGCGCATGAACAAGGTCATTGAAACGGTACTGGAGTTGTCGAGAAGACGCC
CGAGCGAGCCACAACTGATCGATCTGTCACTATGGCTGGAGCATTTTGCCGAGACCTTTGCGCTGAGCCACCCCGCTACC
GACAGGCTTGAGCTGGAAGCAGGTCACAACGTCATGACCCGCATGGACCCCAACCAGCTTAACCAGGTGCTCGACAACCT
GTGCAGCAATGCGCTGCGCTACAGTGGTGCCGAGGGCGAGCATCGCAGCATCTGGCTGAAACTCTATATCCACCCTGAAT
CCAATTTGCCAATTCTGGAAGTGATCGACCATGGACCAGGCATTCCGGAAGAGCATCTCGCGCATATTTTCGAGCCGTTT
TACACCACTGAGACTTCAGGCACTGGCCTGGGGCTGTATATTTCACGCGAACTCTGTGAGAGTAACCAGGCCCGGTTGGA
GTATGAACCCTTGGTACCCCGCGGTAGCTGCATGCGCATCACCTTTGCTCATCCGCGACGCCTTGTATAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-372)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

50.672

98.488

0.499

Multiple sequence alignment