Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FEV15_RS01020 Genome accession   NZ_CP040397
Coordinates   183217..183849 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain BA22372     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 178217..188849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEV15_RS00995 (FEV15_00995) yheS 178386..180299 (+) 1914 WP_000634789.1 ABC transporter ATP-binding protein -
  FEV15_RS01000 (FEV15_01000) yheT 180299..181321 (+) 1023 WP_000057380.1 hydrolase -
  FEV15_RS01005 (FEV15_01005) yheU 181315..181533 (+) 219 WP_000907085.1 YheU family protein -
  FEV15_RS01010 (FEV15_01010) prkB 181587..182456 (+) 870 WP_001274680.1 phosphoribulokinase -
  FEV15_RS01015 (FEV15_01015) yhfA 182511..182915 (-) 405 WP_001148908.1 OsmC family protein -
  FEV15_RS01020 (FEV15_01020) crp 183217..183849 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  FEV15_RS01025 (FEV15_01025) yhfK 183900..185990 (+) 2091 WP_001356225.1 YccS/YhfK family putative transporter -
  FEV15_RS01030 (FEV15_01030) argD 186057..187277 (-) 1221 WP_000963785.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  FEV15_RS01035 (FEV15_01035) pabA 187363..187926 (-) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  FEV15_RS01040 (FEV15_01040) fic 187958..188560 (-) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  FEV15_RS01045 (FEV15_01045) yhfG 188550..188717 (-) 168 WP_000736860.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=321601 FEV15_RS01020 WP_000242755.1 183217..183849(+) (crp) [Escherichia coli strain BA22372]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=321601 FEV15_RS01020 WP_000242755.1 183217..183849(+) (crp) [Escherichia coli strain BA22372]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment