Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   FEL12_RS26490 Genome accession   NZ_CP040316
Coordinates   5367303..5367893 (-) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain CV261     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 5362303..5372893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEL12_RS26475 (FEL12_27240) uhpT 5362943..5364334 (-) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -
  FEL12_RS26480 (FEL12_27245) uhpC 5364472..5365791 (-) 1320 WP_001301991.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  FEL12_RS26485 (FEL12_27250) uhpB 5365801..5367303 (-) 1503 WP_001303725.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  FEL12_RS26490 (FEL12_27255) letA 5367303..5367893 (-) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  FEL12_RS26495 (FEL12_27260) - 5368055..5369158 (-) 1104 WP_001089794.1 hypothetical protein -
  FEL12_RS26500 (FEL12_27265) - 5369766..5370248 (-) 483 WP_000229982.1 hypothetical protein -
  FEL12_RS26505 (FEL12_27270) - 5370396..5371049 (-) 654 WP_000168040.1 hypothetical protein -
  FEL12_RS26510 (FEL12_27275) ilvN 5371312..5371602 (-) 291 WP_001181706.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=321509 FEL12_RS26490 WP_000633668.1 5367303..5367893(-) (letA) [Escherichia coli strain CV261]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=321509 FEL12_RS26490 WP_000633668.1 5367303..5367893(-) (letA) [Escherichia coli strain CV261]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGTTGCTGGGGCTGGAACCTGATTT
GCAAGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACAATTATGCTCTCCGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGTGGCTTTCTCTCCAAGCGTTGTAGCCCTGACGA
ACTGATTGCTGCGGTGCATACGGTTGCCACAGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GCCAGGACCCACTAACCAAACGTGAACGGCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTTGA
ACTGGCGCGCCGTATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378