Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PCC7424_RS13720 Genome accession   NC_011729
Coordinates   3098832..3099197 (-) Length   121 a.a.
NCBI ID   WP_015954799.1    Uniprot ID   B7K8K0
Organism   Gloeothece citriformis PCC 7424     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3093832..3104197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCC7424_RS13705 (PCC7424_2785) - 3095515..3096294 (-) 780 WP_015954796.1 hypothetical protein -
  PCC7424_RS13710 (PCC7424_2786) - 3096651..3096965 (-) 315 WP_015954797.1 hypothetical protein -
  PCC7424_RS29870 (PCC7424_2787) - 3097609..3097842 (-) 234 WP_338028681.1 zinc ribbon domain-containing protein -
  PCC7424_RS13715 (PCC7424_2788) - 3098267..3098815 (-) 549 WP_015954798.1 chemotaxis protein CheW -
  PCC7424_RS13720 (PCC7424_2789) pilH 3098832..3099197 (-) 366 WP_015954799.1 response regulator transcription factor Machinery gene
  PCC7424_RS13725 (PCC7424_2790) - 3099275..3100471 (-) 1197 WP_015954800.1 response regulator -
  PCC7424_RS13730 (PCC7424_2791) - 3101135..3101653 (-) 519 WP_015954801.1 chemotaxis protein CheW -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13254.40 Da        Isoelectric Point: 5.1746

>NTDB_id=32138 PCC7424_RS13720 WP_015954799.1 3098832..3099197(-) (pilH) [Gloeothece citriformis PCC 7424]
MGTALIVDDSLTEREIITHYLKQLGINVSTANSGEEALEKLNSQIPDLIVLDVVLPGRSGFEICRALKADTKTQKIPVIL
CSTKGSEMDKFWGLKQGADAYIPKPVDQELLLTTVKNLIKS

Nucleotide


Download         Length: 366 bp        

>NTDB_id=32138 PCC7424_RS13720 WP_015954799.1 3098832..3099197(-) (pilH) [Gloeothece citriformis PCC 7424]
ATGGGTACTGCCTTAATCGTCGATGATTCTTTAACGGAACGCGAAATTATCACTCATTATCTGAAACAGTTAGGGATTAA
TGTCTCGACAGCTAATAGTGGAGAAGAAGCTCTAGAAAAACTTAATAGTCAAATCCCAGATTTAATTGTTCTCGATGTGG
TTTTACCTGGCCGCAGTGGGTTTGAAATCTGCCGGGCGCTCAAAGCAGACACTAAAACTCAGAAAATTCCTGTCATTCTC
TGTTCGACAAAAGGGAGTGAAATGGATAAATTTTGGGGGTTAAAACAGGGAGCAGATGCTTACATTCCCAAACCCGTCGA
TCAAGAATTATTGCTAACTACGGTGAAAAACTTGATTAAATCCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7K8K0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

50.413

100

0.504
  vicR Streptococcus mutans UA159

40

99.174

0.397
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388

Multiple sequence alignment