Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   PCC8801_RS12460 Genome accession   NC_011726
Coordinates   2638915..2642211 (+) Length   1098 a.a.
NCBI ID   WP_012595822.1    Uniprot ID   -
Organism   Rippkaea orientalis PCC 8801     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2633915..2647211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCC8801_RS12440 (PCC8801_2543) petH 2635177..2636397 (-) 1221 WP_012595818.1 ferredoxin--NADP reductase -
  PCC8801_RS12445 (PCC8801_2544) - 2636662..2637219 (+) 558 WP_012595819.1 DUF4126 domain-containing protein -
  PCC8801_RS12450 (PCC8801_2545) - 2637240..2637719 (+) 480 WP_012595820.1 CYTH domain-containing protein -
  PCC8801_RS12455 (PCC8801_2546) era 2637739..2638683 (+) 945 WP_012595821.1 GTPase Era -
  PCC8801_RS12460 (PCC8801_2547) pilL-C 2638915..2642211 (+) 3297 WP_012595822.1 hybrid sensor histidine kinase/response regulator Machinery gene
  PCC8801_RS12465 (PCC8801_2548) - 2642208..2642699 (-) 492 WP_012595823.1 hypothetical protein -
  PCC8801_RS12470 (PCC8801_2549) cax 2643067..2644164 (+) 1098 WP_012595824.1 calcium/proton exchanger -
  PCC8801_RS12475 (PCC8801_2550) phoU 2644365..2645033 (+) 669 WP_012595825.1 phosphate signaling complex protein PhoU -
  PCC8801_RS12480 (PCC8801_2551) - 2645260..2645757 (+) 498 WP_012595826.1 orange carotenoid protein N-terminal domain-containing protein -
  PCC8801_RS12485 (PCC8801_2552) - 2645851..2646249 (+) 399 WP_012595827.1 ketosteroid isomerase family protein -
  PCC8801_RS12490 (PCC8801_2553) - 2646257..2646697 (-) 441 WP_012595828.1 hypothetical protein -

Sequence

Protein


Download         Length: 1098 a.a.        Molecular weight: 121429.41 Da        Isoelectric Point: 4.5948

>NTDB_id=32117 PCC8801_RS12460 WP_012595822.1 2638915..2642211(+) (pilL-C) [Rippkaea orientalis PCC 8801]
MMSRDSHPDNQHSNSFDRDIADLLDDLTNEFEFAQPDSELDDLVSLFDQDLSGSFAKNHQTHSSGKKSSSSSSLEDEISN
IFHQNCPSSKQTDPSPLADSEEDALDTIFAKHSSSRESKTASDHEELFSQLESSFSDISADKGLADLKQLLHDPSREAEI
IQPKAIAKPTTNTVETDNILSRLYLPFEELESLLKQPVIDPHQQSLDEATAAALAAFIDAPVALSSPPQPALETTTSVDV
DSDLDQEFKDLEALLEQADRTMGGSPTVNVAKGQRTSRARTKVFEQTMRVPVKQLDNLSNLIGELVVKRNRLEQDQERLR
QFLDNLLNQVQNLSDVGGRMQDLYERTLLEGALLASRNQGRGSFPDLGSSQGTKNPGNSDLTNEGGLDALEMDRFTGFHL
LSQEMIELIVRVRESASDIQFVVDETEQVARNLRQATTQLQEGMTKSRMVPFAQTAERLPRAVREISLKLKKKAKLQVEG
RDVLVDKMILEHLFSPMTHLVNNAMTHGIETPEQRQKLGKPAEGRITLQAFLQGNQTVITVSDDGGGIDPEQVKAKAMEK
ELITREEADGLSESEIYDFLFHAGFSTRDKADDFAGRGVGLDVVRTSLSEVRGSVTIDSVRGKGTTFTIRLPLTLSICKA
LCCISDRARIAFPMDGVEDMKDYMPEDLIVDEDGRKAIKWDGQSLPLYPLGELLSYNRQLSRGTVYGGKNEEDTISVIVL
RGTGNLLAVQVDQVIGEQEIVIKQIEGPVPKPPGIAGATVLGDGSIMPIGDVLELIEIAQGRMRTDGPGSLWQKAIPMES
RFVDKTEPTVLIVDDSITVRELLSLSFSKAGYRVEQARDGQEAWEKLRSGLPCDVVFCDIEMPRMNGLELLAHIQKDQHL
CDLPVALLTSRGADRHRQVAAKLGATAYFTKPCPDQTLLNAAQWMMEGEVLLPGSTKKPKKKAIPTVQELSSTEGFDSKP
DQKIPNSVLIIDDSVMVREMLSMTFTKVGYEIEQARDGQEAWEKLRGGLSCKLILCDIEMPRMNGLELLSRLQEDEKLSQ
IPIAMITSRGAQKMQRIAAERGAKGYFVKPYIEEVLLDCAKRLIDGEVLLDINSLVES

Nucleotide


Download         Length: 3297 bp        

>NTDB_id=32117 PCC8801_RS12460 WP_012595822.1 2638915..2642211(+) (pilL-C) [Rippkaea orientalis PCC 8801]
ATGATGAGCCGTGACTCCCACCCAGACAACCAACACAGTAATTCGTTTGACCGTGACATTGCTGACTTGCTAGACGATTT
AACCAATGAGTTTGAGTTTGCTCAACCCGATAGCGAACTCGACGACTTAGTGAGTTTGTTTGATCAAGATCTATCCGGTT
CCTTTGCTAAAAACCATCAAACTCATTCATCAGGAAAGAAATCTTCTTCCTCTTCCTCCCTAGAAGACGAAATTAGCAAC
ATTTTCCACCAAAATTGCCCATCCAGTAAGCAGACAGACCCCTCTCCATTAGCCGATAGCGAAGAAGACGCACTCGATAC
AATCTTTGCCAAACATAGCTCATCACGGGAGTCAAAAACCGCCTCAGATCACGAAGAATTGTTCAGTCAGCTAGAATCGA
GTTTCTCGGACATTTCAGCCGACAAGGGATTAGCCGATCTCAAACAGCTTTTGCATGATCCAAGCCGTGAAGCAGAAATC
ATTCAACCCAAAGCGATCGCCAAACCAACGACCAACACCGTTGAGACTGACAATATTCTCTCTCGGCTCTATTTACCCTT
TGAAGAGCTAGAATCTCTCTTAAAGCAACCCGTCATCGATCCCCATCAACAAAGCCTCGATGAAGCCACCGCCGCCGCAT
TAGCCGCCTTTATTGACGCTCCCGTTGCGCTCTCTAGTCCCCCTCAACCAGCCCTAGAGACAACAACCTCCGTAGACGTA
GACTCCGACTTAGATCAAGAGTTCAAAGACTTAGAAGCCCTTCTTGAACAAGCCGATCGCACCATGGGAGGCTCCCCCAC
CGTCAACGTAGCCAAAGGACAACGTACCAGTCGAGCCAGAACCAAAGTTTTTGAACAAACTATGCGGGTTCCCGTCAAAC
AACTCGATAACCTCAGCAACTTAATCGGGGAATTAGTCGTCAAACGGAACCGCTTAGAACAGGATCAAGAAAGATTACGG
CAATTTTTAGACAACCTGCTCAACCAGGTGCAGAACCTCAGCGATGTTGGGGGACGGATGCAAGATCTCTACGAACGTAC
TCTCCTCGAAGGAGCCCTGCTCGCTAGTCGGAACCAAGGACGAGGGTCTTTTCCCGACTTAGGCAGTAGCCAAGGAACAA
AAAACCCTGGTAACAGTGACCTGACCAACGAAGGCGGCTTAGATGCCCTAGAAATGGACCGATTTACGGGCTTTCATTTG
CTTTCCCAAGAAATGATCGAACTGATCGTCCGCGTCCGAGAATCTGCCTCAGATATTCAATTCGTCGTCGATGAAACCGA
ACAAGTGGCTCGCAACCTGCGTCAAGCCACCACCCAATTACAAGAAGGAATGACCAAATCTCGAATGGTACCCTTTGCTC
AAACAGCAGAACGGCTACCCCGGGCAGTCCGAGAAATTTCCTTGAAATTGAAGAAAAAAGCCAAATTACAAGTGGAAGGG
CGCGATGTTTTAGTCGATAAGATGATCCTAGAACATCTGTTTAGCCCCATGACCCACCTCGTTAATAATGCCATGACCCA
CGGGATTGAGACTCCCGAACAGCGACAAAAATTAGGGAAGCCTGCCGAAGGACGTATTACCCTCCAGGCCTTTCTCCAAG
GAAACCAAACGGTGATTACCGTTTCTGACGATGGGGGAGGGATCGATCCCGAACAGGTCAAAGCCAAGGCGATGGAAAAA
GAGCTCATTACTCGCGAAGAAGCCGACGGATTATCAGAATCGGAAATTTATGACTTCCTCTTCCATGCCGGGTTCAGTAC
GCGAGATAAAGCCGATGATTTCGCCGGTCGTGGAGTCGGCTTAGACGTAGTACGCACCAGTTTAAGCGAAGTACGCGGTT
CTGTGACCATTGATTCCGTCAGAGGCAAAGGAACGACCTTTACCATTCGTTTACCCTTGACCTTGAGTATTTGTAAAGCC
CTCTGTTGTATCAGCGATCGCGCTCGCATTGCTTTCCCCATGGATGGGGTAGAAGACATGAAGGATTATATGCCCGAGGA
TTTAATTGTCGATGAGGATGGACGCAAAGCCATTAAATGGGACGGTCAATCCCTGCCTCTCTATCCCTTGGGTGAATTGC
TCTCCTATAACCGTCAATTGAGCCGTGGTACTGTCTATGGCGGTAAAAATGAGGAGGATACTATCTCGGTGATTGTCCTA
CGCGGGACAGGGAATTTACTCGCGGTTCAAGTGGATCAGGTCATCGGCGAACAGGAAATCGTGATTAAACAAATCGAGGG
GCCAGTCCCTAAACCCCCCGGAATTGCTGGAGCAACCGTCTTAGGGGATGGTAGCATTATGCCCATCGGGGACGTATTGG
AGTTGATTGAAATTGCTCAAGGACGGATGCGAACTGATGGACCAGGTAGTCTGTGGCAAAAAGCCATCCCGATGGAGTCT
CGCTTTGTGGATAAAACTGAGCCGACGGTGTTAATTGTGGATGACTCCATTACAGTACGCGAACTACTGTCGTTGAGCTT
TAGTAAGGCCGGATATCGGGTGGAACAGGCACGAGATGGTCAGGAAGCCTGGGAAAAATTGCGATCGGGTCTGCCTTGCG
ATGTGGTCTTCTGTGATATCGAAATGCCCCGCATGAACGGGTTAGAATTGTTGGCTCATATTCAAAAAGATCAACACCTG
TGTGACCTTCCTGTGGCCTTACTGACCTCACGGGGGGCTGATCGTCACCGTCAGGTTGCTGCTAAATTAGGGGCGACGGC
TTATTTTACTAAGCCTTGTCCGGATCAAACCCTCCTGAATGCAGCCCAATGGATGATGGAAGGCGAAGTCTTGCTGCCAG
GTAGCACGAAAAAACCCAAAAAGAAAGCCATTCCAACGGTTCAAGAACTTTCATCTACGGAAGGGTTCGATAGTAAACCT
GATCAGAAAATCCCTAATTCGGTGTTAATTATCGATGACTCGGTGATGGTACGAGAAATGCTGTCGATGACGTTTACTAA
GGTAGGTTATGAGATTGAACAGGCACGAGACGGTCAGGAAGCCTGGGAAAAATTGCGGGGTGGGTTATCTTGTAAGTTGA
TTCTCTGTGATATTGAAATGCCTCGAATGAATGGACTAGAGTTGTTGTCCCGTCTCCAAGAAGATGAAAAACTCTCTCAA
ATTCCTATTGCCATGATTACTTCCCGTGGAGCCCAAAAAATGCAGCGCATTGCCGCAGAAAGAGGAGCAAAAGGGTATTT
TGTCAAGCCTTATATTGAAGAAGTGTTACTCGATTGTGCTAAGCGATTGATTGATGGAGAGGTATTACTTGATATCAATA
GTTTAGTAGAAAGTTAA

Domains

Predicted by InterproScan.

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(286-342)

Response regulator receiver domain (Response_reg)

(810-922)

Response regulator receiver domain (Response_reg)

(968-1077)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(497-634)

CheW-like domain (CheW)

(641-777)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

65.984

88.889

0.587

Multiple sequence alignment