Detailed information NTG0032123

Bioinformatically predicted

Overview

• Name: pilH
• Type: Machinery gene
• Locus tag: PCC8801_RS16260
• Genome accession: NC_011726
• Coordinates: 3484400..3484765 (+)
• Length: 121 a.a.
• NCBI ID: WP_012596568.1
• Uniprot ID: B7JZ96
• Organism: Rippkaea orientalis PCC 8801
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3479400..3489765

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCC8801_RS16245 (PCC8801_3334)	rfbG	3480579..3481739 (-)	1161	WP_012596565.1	CDP-glucose 4,6-dehydratase	-
PCC8801_RS16250 (PCC8801_3335)	rfbF	3481724..3482554 (-)	831	WP_012596566.1	glucose-1-phosphate cytidylyltransferase	-
PCC8801_RS16255 (PCC8801_3336)	-	3483089..3484288 (+)	1200	WP_012596567.1	response regulator	-
PCC8801_RS16260 (PCC8801_3337)	pilH	3484400..3484765 (+)	366	WP_012596568.1	response regulator transcription factor	Machinery gene
PCC8801_RS16265 (PCC8801_3338)	-	3484790..3485332 (+)	543	WP_012596569.1	chemotaxis protein CheW	-
PCC8801_RS16270 (PCC8801_3339)	-	3485374..3488835 (+)	3462	WP_012596570.1	methyl-accepting chemotaxis protein	-
PCC8801_RS16275 (PCC8801_3340)	-	3489037..3489666 (+)	630	WP_012596571.1	Tll0287-like domain-containing protein	-

Sequence

Protein

• Length: 121 a.a.
• Molecular weight: 13215.30 Da
• Isoelectric Point: 4.5385

>NTDB_id=32123 PCC8801_RS16260 WP_012596568.1 3484400..3484765(+) (pilH) [Rippkaea orientalis PCC 8801]
MGTALIVEDSLTEREIISQCLQRAGLSVSIAVSGEEALEKLNISLPDVIVLDVVLPGLSGFEICRTLKAEDRTSNIPVII
CSTKNTDMDKFWGKRQGADAYIPKPIDQETLVNTVKQLIKS

Nucleotide

• Length: 366 bp

>NTDB_id=32123 PCC8801_RS16260 WP_012596568.1 3484400..3484765(+) (pilH) [Rippkaea orientalis PCC 8801]
ATGGGAACCGCCCTGATCGTTGAAGATTCCTTAACCGAACGCGAAATTATCAGCCAATGCTTGCAACGAGCTGGCTTAAG
CGTATCCATCGCCGTGAGTGGAGAAGAAGCCCTAGAAAAGCTTAATATCAGCCTTCCGGATGTGATTGTCCTCGATGTTG
TTTTGCCTGGACTGAGTGGCTTTGAAATTTGCCGAACCTTAAAAGCCGAAGATCGCACCAGCAATATTCCCGTAATTATT
TGTTCGACCAAAAATACCGATATGGATAAATTTTGGGGCAAACGACAAGGAGCCGATGCCTATATTCCCAAACCCATTGA
CCAAGAAACCTTGGTGAATACGGTTAAACAGTTGATCAAATCCTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (5-115)

3D structure

• AlphaFold DB: B7JZ96

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilH	Synechocystis sp. PCC 6803	51.24	100	0.512