Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PCC8801_RS13985 Genome accession   NC_011726
Coordinates   2958529..2960166 (+) Length   545 a.a.
NCBI ID   WP_012596133.1    Uniprot ID   -
Organism   Rippkaea orientalis PCC 8801     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2953529..2965166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCC8801_RS13970 (PCC8801_2865) - 2954454..2956091 (+) 1638 WP_012596130.1 mechanosensitive ion channel family protein -
  PCC8801_RS13975 (PCC8801_2866) - 2956140..2957549 (-) 1410 WP_012596131.1 anthranilate synthase component I -
  PCC8801_RS13980 (PCC8801_2867) - 2957581..2958453 (-) 873 WP_012596132.1 energy-coupling factor transporter transmembrane component T family protein -
  PCC8801_RS13985 (PCC8801_2868) comA 2958529..2960166 (+) 1638 WP_012596133.1 DUF655 domain-containing protein Machinery gene
  PCC8801_RS13990 (PCC8801_2869) hslO 2960232..2961137 (-) 906 WP_012596134.1 Hsp33 family molecular chaperone HslO -
  PCC8801_RS13995 (PCC8801_2870) - 2961219..2962700 (-) 1482 WP_012596135.1 TM0106 family RecB-like putative nuclease -
  PCC8801_RS14000 (PCC8801_2872) - 2963139..2963816 (-) 678 WP_012596137.1 diacylglycerol/polyprenol kinase family protein -
  PCC8801_RS14005 (PCC8801_2873) - 2963958..2964185 (+) 228 WP_012596138.1 hypothetical protein -

Sequence

Protein


Download         Length: 545 a.a.        Molecular weight: 61227.60 Da        Isoelectric Point: 4.9762

>NTDB_id=32119 PCC8801_RS13985 WP_012596133.1 2958529..2960166(+) (comA) [Rippkaea orientalis PCC 8801]
MQRSPWTQWISSLVLIVGLWGVSSCQSQANLERPKPLPQDPLIQVYFNHNQSQGSDYTEPYRNITRSGDNLEQILIDAIK
AARSTIDIAVQEFRLPNVAKALVEQAKRGVKVRIILENTYTTPISQSAQQTIDNETEREAEKSEEYFAFVDVNQDGKLNS
EEISDRDALVILNQAKIPVIDDRDDGSKGSGLMHHKFMVIDNKIVMTGSMNFTPSDVHGDVTNLETRGNDNNLLKINSAE
IAQVFTEEFNLMWGDGVGGNFDSQFGVKKSMRSPQTLTVGNSRITVKFSPNSRQENWQNTSNGLIETTLNRATNSINLAL
FVFSEQTLVDDLEKKHDQGVEIRALIDPEFVFRSYSEGLDMLGVALSDNCRYEPNNKPWLNPIDTVGIPNIPDGDKLHHK
MAVIDQTIVITGSHNWSEAANHQNDETLLIIENPTIAAHYQREFDRLYSTAQLGLPDFVQKKIQKDTDNCPTFSTRKSSR
HTDEIINLNTATQAELESLPGIGEKTAQKIIEERQKKPFTSLDDLTRVSGIGEAKIKRLQGKVTW

Nucleotide


Download         Length: 1638 bp        

>NTDB_id=32119 PCC8801_RS13985 WP_012596133.1 2958529..2960166(+) (comA) [Rippkaea orientalis PCC 8801]
ATGCAGCGATCGCCTTGGACACAATGGATTAGTTCCCTAGTATTAATTGTGGGATTATGGGGGGTTTCTTCTTGTCAGTC
TCAAGCTAATCTTGAGCGTCCCAAACCATTACCCCAAGACCCCTTAATTCAGGTTTATTTTAATCATAATCAGTCTCAAG
GATCTGATTATACTGAACCTTATCGTAATATTACTCGTTCGGGAGATAACCTCGAACAAATCCTAATTGATGCCATTAAA
GCTGCCCGTTCTACCATTGATATTGCGGTTCAAGAATTTCGTTTACCCAATGTAGCTAAAGCCTTAGTAGAACAAGCAAA
ACGAGGTGTTAAAGTAAGAATTATTTTAGAAAATACCTATACTACTCCTATTAGTCAATCGGCTCAACAAACCATTGATA
ATGAAACAGAAAGAGAAGCGGAAAAATCGGAGGAATATTTTGCTTTTGTTGATGTTAATCAAGATGGAAAATTGAATTCA
GAAGAAATCAGCGATCGTGATGCTTTAGTCATTTTAAATCAAGCGAAAATTCCAGTCATTGATGATAGAGATGATGGCTC
AAAAGGAAGCGGGTTAATGCACCATAAATTTATGGTAATTGATAATAAAATCGTCATGACTGGTTCAATGAATTTTACGC
CAAGTGACGTTCATGGAGATGTTACTAATTTAGAAACGCGAGGCAATGATAATAATTTACTGAAGATCAATTCCGCTGAA
ATTGCTCAAGTTTTTACCGAAGAATTTAATCTGATGTGGGGGGATGGAGTAGGAGGAAATTTTGATAGTCAATTTGGAGT
TAAAAAATCAATGCGATCGCCCCAAACTTTGACTGTTGGAAATTCAAGAATTACGGTAAAATTTTCGCCTAATTCTAGAC
AAGAAAATTGGCAAAATACAAGTAATGGTTTGATTGAAACGACTTTAAATAGAGCAACTAATTCGATTAATTTAGCCCTG
TTTGTTTTCAGTGAACAAACCTTAGTTGATGACCTAGAAAAAAAGCATGATCAAGGTGTAGAAATAAGAGCCTTAATTGA
CCCTGAATTTGTTTTTCGTAGCTATAGTGAAGGCTTAGATATGTTAGGGGTTGCTTTGAGTGATAACTGTCGCTATGAAC
CGAATAATAAACCTTGGTTAAATCCCATTGATACGGTGGGTATTCCTAATATCCCAGACGGCGATAAACTGCATCATAAA
ATGGCTGTTATTGATCAAACTATTGTGATTACGGGTTCCCATAATTGGTCAGAAGCAGCCAATCATCAAAATGATGAAAC
ACTTTTAATTATTGAAAATCCGACAATAGCAGCCCATTATCAACGAGAATTTGATAGATTATATAGTACCGCCCAATTAG
GATTACCCGATTTTGTCCAGAAAAAAATTCAAAAAGATACTGACAATTGTCCGACTTTTTCTACTCGTAAATCTTCCCGT
CATACCGATGAGATTATTAATCTTAATACCGCCACTCAAGCAGAATTAGAAAGTTTACCCGGAATTGGTGAAAAAACTGC
TCAGAAAATTATTGAAGAACGTCAGAAAAAACCCTTTACTTCTTTAGATGATTTAACGAGAGTATCGGGAATTGGAGAGG
CAAAAATTAAACGATTACAAGGTAAAGTAACTTGGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(484-544)

PLD-like domain (PLDc_2)

(75-253)

PLD-like domain (PLDc_2)

(306-447)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

52.897

98.165

0.519

Multiple sequence alignment