Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PCC8801_RS06030 Genome accession   NC_011726
Coordinates   1285613..1285981 (-) Length   122 a.a.
NCBI ID   WP_012594574.1    Uniprot ID   B7K3F8
Organism   Rippkaea orientalis PCC 8801     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1280613..1290981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCC8801_RS06015 (PCC8801_1231) - 1281559..1282839 (-) 1281 WP_012594571.1 dihydrolipoamide acetyltransferase family protein -
  PCC8801_RS06020 (PCC8801_1232) dtd 1282967..1283410 (+) 444 WP_012594572.1 D-aminoacyl-tRNA deacylase -
  PCC8801_RS06025 (PCC8801_1233) - 1283417..1285513 (+) 2097 WP_012594573.1 hydantoinase/oxoprolinase family protein -
  PCC8801_RS06030 (PCC8801_1234) pilH 1285613..1285981 (-) 369 WP_012594574.1 response regulator Machinery gene
  PCC8801_RS06035 (PCC8801_1235) - 1286272..1287747 (+) 1476 WP_012594575.1 CIA30 family protein -
  PCC8801_RS06040 (PCC8801_1236) - 1287846..1288268 (-) 423 WP_012594576.1 DUF29 family protein -
  PCC8801_RS06045 (PCC8801_1237) psbA 1288606..1289676 (+) 1071 WP_012594577.1 photosystem II q(b) protein -
  PCC8801_RS06050 (PCC8801_1238) - 1289829..1290410 (-) 582 WP_012594578.1 Uma2 family endonuclease -
  PCC8801_RS23150 (PCC8801_1239) - 1290571..1290738 (+) 168 WP_012594579.1 hypothetical protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13636.74 Da        Isoelectric Point: 4.5271

>NTDB_id=32112 PCC8801_RS06030 WP_012594574.1 1285613..1285981(-) (pilH) [Rippkaea orientalis PCC 8801]
MTTILVTDDSTAQRELIAGLLVDNGFSVITAIDGEQALEKVQETLFDLIILDVVMPKLNGFQTCRKLKEDPKTQNIPVIL
CSTKNTDVDRYWAKKQGANEYIVKPFSPNELIEKVQQLLGQA

Nucleotide


Download         Length: 369 bp        

>NTDB_id=32112 PCC8801_RS06030 WP_012594574.1 1285613..1285981(-) (pilH) [Rippkaea orientalis PCC 8801]
ATGACTACTATTCTAGTTACCGATGATAGCACTGCTCAGCGTGAATTAATTGCTGGATTGCTGGTAGATAATGGCTTTTC
TGTCATAACAGCTATTGATGGCGAACAAGCTTTAGAGAAAGTTCAAGAAACCCTATTTGATTTAATTATCCTAGACGTTG
TTATGCCTAAACTTAACGGGTTTCAGACTTGTCGAAAACTCAAAGAAGATCCTAAAACGCAGAATATACCTGTTATTCTT
TGTTCTACAAAAAATACTGACGTTGACCGTTATTGGGCTAAAAAACAAGGGGCTAATGAGTATATCGTCAAGCCTTTTTC
TCCTAATGAATTAATTGAAAAAGTTCAGCAGCTATTAGGACAAGCATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7K3F8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

51.261

97.541

0.5
  pilG Acinetobacter baumannii strain A118

40.708

92.623

0.377

Multiple sequence alignment