Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   UTEX3055_RS01235 Genome accession   NZ_CP033061
Coordinates   264213..264575 (-) Length   120 a.a.
NCBI ID   WP_011242996.1    Uniprot ID   Q31PY3
Organism   Synechococcus elongatus UTEX 3055     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 259213..269575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UTEX3055_RS01225 - 259395..263615 (-) 4221 WP_126146716.1 GAF domain-containing protein -
  UTEX3055_RS01230 - 263687..264115 (-) 429 WP_231621329.1 chemotaxis protein CheW -
  UTEX3055_RS01235 pilH 264213..264575 (-) 363 WP_011242996.1 response regulator Machinery gene
  UTEX3055_RS01240 - 264626..265852 (-) 1227 WP_238154236.1 response regulator -
  UTEX3055_RS14530 - 266590..266763 (+) 174 WP_161565856.1 hypothetical protein -
  UTEX3055_RS01245 - 266879..269275 (-) 2397 WP_126146718.1 GH116 family glycosyl hydrolase -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13303.36 Da        Isoelectric Point: 4.6952

>NTDB_id=321018 UTEX3055_RS01235 WP_011242996.1 264213..264575(-) (pilH) [Synechococcus elongatus UTEX 3055]
MSTVLVVEDTASEMELITTYLRNSGYTVIGAADAKEALNKVSQFKPDVVVTDVVMPGMSGFELCRSLKKNPETEKLPVIV
CSSKNQEIDRLWAMKQGADAYVIKPFQQEDLVKAVRSVDF

Nucleotide


Download         Length: 363 bp        

>NTDB_id=321018 UTEX3055_RS01235 WP_011242996.1 264213..264575(-) (pilH) [Synechococcus elongatus UTEX 3055]
ATGAGTACAGTACTTGTTGTAGAAGACACCGCTTCTGAAATGGAGCTAATCACCACCTACTTGCGAAATAGCGGTTACAC
AGTCATCGGGGCTGCTGATGCCAAAGAAGCACTGAACAAGGTGAGCCAGTTTAAGCCTGATGTTGTTGTGACTGATGTGG
TCATGCCTGGCATGAGTGGCTTTGAATTGTGCCGGAGCCTCAAGAAAAATCCCGAGACAGAAAAGCTACCTGTCATTGTC
TGTAGTTCCAAAAATCAAGAGATTGATCGCCTCTGGGCGATGAAACAGGGGGCTGATGCTTACGTCATTAAGCCTTTCCA
ACAGGAAGATTTAGTAAAGGCTGTTCGCTCAGTTGACTTCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31PY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

50

98.333

0.492
  letA Legionella pneumophila str. Paris

35.484

100

0.367
  letA Legionella pneumophila strain ERS1305867

35.484

100

0.367

Multiple sequence alignment