Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   D9777_RS19620 Genome accession   NZ_CP033054
Coordinates   3901564..3902253 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain Bac57     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3896564..3907253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9777_RS19585 - 3896763..3897245 (-) 483 WP_003151394.1 flagellar protein FlgN -
  D9777_RS19590 flgM 3897260..3897526 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  D9777_RS19595 - 3897596..3898015 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  D9777_RS19600 comFC 3898089..3898778 (-) 690 WP_199449054.1 ComF family protein Machinery gene
  D9777_RS19605 - 3898784..3899068 (-) 285 WP_003151389.1 competence protein ComFB -
  D9777_RS19610 - 3899126..3900510 (-) 1385 Protein_3772 DEAD/DEAH box helicase -
  D9777_RS19615 - 3900618..3901466 (-) 849 WP_003151387.1 DegV family protein -
  D9777_RS19620 degU 3901564..3902253 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  D9777_RS19625 degS 3902330..3903493 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  D9777_RS19630 - 3903716..3904363 (+) 648 WP_021494097.1 YigZ family protein -
  D9777_RS19635 - 3904368..3905582 (+) 1215 WP_014419013.1 LCP family protein -
  D9777_RS19640 - 3905672..3906748 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=320967 D9777_RS19620 WP_003219701.1 3901564..3902253(-) (degU) [Bacillus velezensis strain Bac57]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=320967 D9777_RS19620 WP_003219701.1 3901564..3902253(-) (degU) [Bacillus velezensis strain Bac57]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCCGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCTGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment