Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   D9777_RS19600 Genome accession   NZ_CP033054
Coordinates   3898089..3898778 (-) Length   229 a.a.
NCBI ID   WP_199449054.1    Uniprot ID   -
Organism   Bacillus velezensis strain Bac57     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3893089..3903778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9777_RS19565 fliW 3893180..3893611 (-) 432 WP_021494095.1 flagellar assembly protein FliW -
  D9777_RS19570 - 3893641..3894210 (-) 570 WP_003151397.1 DUF6470 family protein -
  D9777_RS19575 flgL 3894301..3895218 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  D9777_RS19580 flgK 3895230..3896747 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  D9777_RS19585 - 3896763..3897245 (-) 483 WP_003151394.1 flagellar protein FlgN -
  D9777_RS19590 flgM 3897260..3897526 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  D9777_RS19595 - 3897596..3898015 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  D9777_RS19600 comFC 3898089..3898778 (-) 690 WP_199449054.1 ComF family protein Machinery gene
  D9777_RS19605 - 3898784..3899068 (-) 285 WP_003151389.1 competence protein ComFB -
  D9777_RS19610 - 3899126..3900510 (-) 1385 Protein_3772 DEAD/DEAH box helicase -
  D9777_RS19615 - 3900618..3901466 (-) 849 WP_003151387.1 DegV family protein -
  D9777_RS19620 degU 3901564..3902253 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  D9777_RS19625 degS 3902330..3903493 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25275.91 Da        Isoelectric Point: 8.2927

>NTDB_id=320966 D9777_RS19600 WP_199449054.1 3898089..3898778(-) (comFC) [Bacillus velezensis strain Bac57]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSACSSQFEKIEGPVCSICGRPRESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=320966 D9777_RS19600 WP_199449054.1 3898089..3898778(-) (comFC) [Bacillus velezensis strain Bac57]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCGCATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCGGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment