Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   D9777_RS17600 Genome accession   NZ_CP033054
Coordinates   3473280..3473924 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain Bac57     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3468280..3478924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9777_RS17565 - 3469465..3469896 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  D9777_RS17570 - 3469896..3470237 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  D9777_RS17575 - 3470230..3471711 (+) 1482 WP_021495363.1 Na+/H+ antiporter subunit D -
  D9777_RS17580 - 3471717..3472193 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  D9777_RS17585 - 3472193..3472477 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  D9777_RS17590 mnhG 3472461..3472835 (+) 375 WP_007613429.1 monovalent cation/H(+) antiporter subunit G -
  D9777_RS17595 - 3472875..3473258 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  D9777_RS17600 comA 3473280..3473924 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  D9777_RS17605 comP 3474005..3476308 (-) 2304 WP_021495364.1 histidine kinase Regulator
  D9777_RS21850 comX 3476328..3476507 (-) 180 WP_306383677.1 competence pheromone ComX -
  D9777_RS17615 comQ 3476434..3477447 (-) 1014 WP_021495365.1 class 1 isoprenoid biosynthesis enzyme Regulator
  D9777_RS17620 degQ 3477578..3477718 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  D9777_RS17630 - 3478184..3478525 (+) 342 WP_021495366.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=320960 D9777_RS17600 WP_003152052.1 3473280..3473924(-) (comA) [Bacillus velezensis strain Bac57]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=320960 D9777_RS17600 WP_003152052.1 3473280..3473924(-) (comA) [Bacillus velezensis strain Bac57]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTTGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
TGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment