Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   EST53_RS16360 Genome accession   NZ_CP040269
Coordinates   3419985..3420617 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain 1500     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3414985..3425617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EST53_RS16335 (EST53_16335) yhfG 3415117..3415284 (+) 168 WP_000736860.1 YhfG family protein -
  EST53_RS16340 (EST53_16340) fic 3415274..3415876 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  EST53_RS16345 (EST53_16345) pabA 3415908..3416471 (+) 564 WP_000601850.1 aminodeoxychorismate synthase component 2 -
  EST53_RS16350 (EST53_16350) argD 3416557..3417777 (+) 1221 WP_000963792.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  EST53_RS16355 (EST53_16355) yhfK 3417844..3419934 (-) 2091 WP_001345983.1 YccS/YhfK family putative transporter -
  EST53_RS16360 (EST53_16360) crp 3419985..3420617 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  EST53_RS16365 (EST53_16365) yhfA 3420919..3421323 (+) 405 WP_001148908.1 OsmC family protein -
  EST53_RS16370 (EST53_16370) prkB 3421378..3422247 (-) 870 WP_001274680.1 phosphoribulokinase -
  EST53_RS16375 (EST53_16375) yheU 3422301..3422519 (-) 219 WP_000907085.1 YheU family protein -
  EST53_RS16380 (EST53_16380) yheT 3422513..3423535 (-) 1023 WP_000057346.1 hydrolase -
  EST53_RS16385 (EST53_16385) yheS 3423535..3425448 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=320938 EST53_RS16360 WP_000242755.1 3419985..3420617(-) (crp) [Escherichia coli strain 1500]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=320938 EST53_RS16360 WP_000242755.1 3419985..3420617(-) (crp) [Escherichia coli strain 1500]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment