Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   LLKF_RS09020 Genome accession   NC_013656
Coordinates   1865027..1866025 (-) Length   332 a.a.
NCBI ID   WP_003129447.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis KF147     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1860027..1871025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLKF_RS09000 (LLKF_1801) trxA 1860417..1860731 (-) 315 WP_003129442.1 thioredoxin -
  LLKF_RS09005 (LLKF_1802) mutS/mutS2 1860828..1863158 (-) 2331 WP_012898245.1 endonuclease MutS2 Machinery gene
  LLKF_RS09010 (LLKF_1803) - 1863203..1863763 (-) 561 WP_012898246.1 CvpA family protein -
  LLKF_RS09015 (LLKF_1804) - 1863923..1864888 (-) 966 WP_012898247.1 NAD(P)/FAD-dependent oxidoreductase -
  LLKF_RS09020 (LLKF_1805) ccpA 1865027..1866025 (-) 999 WP_003129447.1 catabolite control protein A Regulator
  LLKF_RS09025 (LLKF_1806) - 1866240..1867328 (+) 1089 WP_012898248.1 M24 family metallopeptidase -
  LLKF_RS09030 (LLKF_1807) - 1867612..1869612 (-) 2001 WP_012898249.1 cell division site-positioning protein MapZ family protein -
  LLKF_RS09035 (LLKF_1808) - 1869759..1870913 (-) 1155 WP_012898250.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 36602.71 Da        Isoelectric Point: 4.9196

>NTDB_id=32090 LLKF_RS09020 WP_003129447.1 1865027..1866025(-) (ccpA) [Lactococcus lactis subsp. lactis KF147]
MVESTTTIYDVARVAGVSMATVSRVVNGNANVKEKTRQKVLEAIAELDYRPNAVARGLASKRTTTVGVILPTITSTYFAA
ITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLKNSRTPVVLVGTIDGDKEIPSV
NIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGA
TSAVVSHDTVAVGLLSAMMDKGVKVPEDFEIISGANSPITQYTYPTLTSVNQPLYDLGAVAMRLLTKLMLKEDVEQNQLV
LDHEIFSRRSTK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=32090 LLKF_RS09020 WP_003129447.1 1865027..1866025(-) (ccpA) [Lactococcus lactis subsp. lactis KF147]
ATGGTAGAATCAACAACAACAATTTATGATGTGGCACGTGTCGCCGGAGTGTCAATGGCAACCGTTAGTCGTGTTGTAAA
TGGAAATGCAAATGTAAAGGAAAAGACGCGCCAGAAGGTCTTAGAAGCTATTGCTGAGCTTGACTATCGTCCTAATGCAG
TTGCGCGCGGACTCGCAAGTAAACGTACAACAACAGTTGGTGTTATCTTGCCAACCATCACTTCAACTTACTTCGCAGCG
ATTACTCGCGGGGTTGATGATATCGCTTCCATGTATAAATACAACATGATTTTAGCTAATAGTGATAATGATGTTGAAAA
AGAAGAAAAAGTTTTAGAAACTTTCTTATCAAAACAAGTTGACGGAATCGTCTATATGGGTTCATCTTTAGATGAAAAAA
TTAGAACTTCCCTCAAAAATTCAAGAACACCTGTCGTTTTAGTTGGAACAATCGATGGAGATAAAGAAATTCCATCTGTT
AATATTGATTACCATTTGGCTGCTTATCAATCAACTAAAAAATTGATTGATAGCGGAAATAAAAAAATCGCTTATATCAT
GGGTTCATTGAAAGACGTTGAAAATACAGAACGCATGGTTGGTTATCAAGAAGCTTTGCTTGAAGCAAATATTGAATTTG
ATGAAAACCTCGTTTTTGAAGGTAATTATAGCTATGAACAAGGAAAAGCACTTGCTGAGCGTTTACTTGAGCGAGGAGCA
ACTTCTGCAGTAGTATCACATGATACAGTAGCCGTTGGACTCTTGTCTGCAATGATGGATAAAGGAGTGAAAGTTCCTGA
AGATTTCGAAATTATCTCAGGTGCAAATTCACCAATTACTCAATATACATATCCAACTTTAACTTCTGTTAACCAACCCC
TTTACGATTTGGGAGCAGTAGCAATGCGTCTTTTGACAAAATTAATGCTTAAAGAAGATGTTGAACAAAATCAATTAGTT
TTGGATCATGAAATCTTTTCTCGTCGTTCTACCAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(7-52)

Periplasmic binding protein-like domain (Peripla_BP_3)

(173-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

100

100

1
  ccpA Streptococcus pneumoniae D39

57.402

99.699

0.572
  ccpA Streptococcus gordonii str. Challis substr. CH1

57.1

99.699

0.569

Multiple sequence alignment