Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   D9779_RS19250 Genome accession   NZ_CP033052
Coordinates   3713361..3713480 (+) Length   39 a.a.
NCBI ID   WP_003222023.1    Uniprot ID   A0A9Q4EZF5
Organism   Bacillus vallismortis strain Bac111     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3708361..3718480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9779_RS19215 - 3708582..3708710 (+) 129 Protein_3686 subtilosin A family bacteriocin -
  D9779_RS19220 albA 3708845..3710149 (+) 1305 Protein_3687 subtilosin maturase AlbA -
  D9779_RS19225 albB 3710204..3710365 (+) 162 WP_121643504.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbB -
  D9779_RS20620 - 3710362..3710496 (+) 135 Protein_3689 ATP-binding cassette domain-containing protein -
  D9779_RS21105 - 3710500..3710601 (+) 102 Protein_3690 bacteriocin biosynthesis protein AlbG -
  D9779_RS19235 - 3710608..3712002 (-) 1395 WP_121643788.1 YncE family protein -
  D9779_RS19245 rapF 3712232..3713377 (+) 1146 WP_010328972.1 response regulator aspartate phosphatase RapF Regulator
  D9779_RS19250 phrF 3713361..3713480 (+) 120 WP_003222023.1 phosphatase RapF inhibitor PhrF Regulator
  D9779_RS19255 - 3713725..3714198 (+) 474 WP_010328973.1 hypothetical protein -
  D9779_RS19260 - 3714355..3715143 (+) 789 WP_010328974.1 membrane protein -
  D9779_RS19275 - 3716619..3717266 (+) 648 WP_010328977.1 ABC transporter ATP-binding protein -
  D9779_RS19280 - 3717259..3717822 (+) 564 WP_121643507.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4226.12 Da        Isoelectric Point: 10.4997

>NTDB_id=320896 D9779_RS19250 WP_003222023.1 3713361..3713480(+) (phrF) [Bacillus vallismortis strain Bac111]
MKLKSKLLLSCLALSTVFIATNIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=320896 D9779_RS19250 WP_003222023.1 3713361..3713480(+) (phrF) [Bacillus vallismortis strain Bac111]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCCCTAAGCACTGTTTTCATCGCAACGAATATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAGCGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

92.593

69.231

0.641
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment