Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   D9779_RS16200 Genome accession   NZ_CP033052
Coordinates   3116406..3117050 (-) Length   214 a.a.
NCBI ID   WP_010329906.1    Uniprot ID   A0AAP3FU71
Organism   Bacillus vallismortis strain Bac111     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3111406..3122050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9779_RS16165 - 3112594..3113025 (+) 432 WP_010329899.1 Na(+)/H(+) antiporter subunit B -
  D9779_RS16170 - 3113025..3113366 (+) 342 WP_010329900.1 Na(+)/H(+) antiporter subunit C -
  D9779_RS16175 - 3113359..3114843 (+) 1485 WP_121643186.1 Na+/H+ antiporter subunit D -
  D9779_RS16180 - 3114849..3115325 (+) 477 WP_121643187.1 Na+/H+ antiporter subunit E -
  D9779_RS16185 - 3115325..3115609 (+) 285 WP_121643188.1 Na(+)/H(+) antiporter subunit F1 -
  D9779_RS16190 mnhG 3115593..3115967 (+) 375 WP_010329904.1 monovalent cation/H(+) antiporter subunit G -
  D9779_RS16195 - 3116007..3116387 (-) 381 WP_121643189.1 hotdog fold thioesterase -
  D9779_RS16200 comA 3116406..3117050 (-) 645 WP_010329906.1 two-component system response regulator ComA Regulator
  D9779_RS16205 comP 3117131..3119449 (-) 2319 WP_010329907.1 sensor histidine kinase Regulator
  D9779_RS16210 comX 3119469..3119645 (-) 177 WP_010329908.1 competence pheromone ComX -
  D9779_RS16215 - 3119660..3120553 (-) 894 WP_240467595.1 polyprenyl synthetase family protein -
  D9779_RS16220 degQ 3120684..3120824 (-) 141 WP_121643190.1 degradation enzyme regulation protein DegQ Regulator
  D9779_RS16225 - 3121046..3121171 (+) 126 WP_121643768.1 hypothetical protein -
  D9779_RS16230 - 3121284..3121649 (+) 366 WP_121643191.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24120.57 Da        Isoelectric Point: 4.7737

>NTDB_id=320883 D9779_RS16200 WP_010329906.1 3116406..3117050(-) (comA) [Bacillus vallismortis strain Bac111]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSDKFIKQHDFSSYDLILMDLNLGGEINGMELSKQILQESPRCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=320883 D9779_RS16200 WP_010329906.1 3116406..3117050(-) (comA) [Bacillus vallismortis strain Bac111]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATCT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGACAAGTTTATTAAGCAGCATGATTTCTCGTCATATGATCTCATCTTAA
TGGATTTGAATTTAGGCGGCGAGATCAATGGGATGGAGCTTTCTAAACAAATTTTACAAGAAAGTCCTCGTTGTAAGATT
ATTGTGTATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCGCTTCATTTGAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

97.664

100

0.977

Multiple sequence alignment