Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   D9779_RS13095 Genome accession   NZ_CP033052
Coordinates   2528176..2529246 (-) Length   356 a.a.
NCBI ID   WP_121642898.1    Uniprot ID   A0AAP3CJS8
Organism   Bacillus vallismortis strain Bac111     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2523176..2534246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9779_RS13050 tapA 2523655..2524419 (-) 765 WP_121642892.1 amyloid fiber anchoring/assembly protein TapA -
  D9779_RS13055 - 2524688..2525014 (+) 327 WP_026014435.1 YqzG/YhdC family protein -
  D9779_RS13060 - 2525058..2525237 (-) 180 WP_010328251.1 YqzE family protein -
  D9779_RS13065 comGG 2525309..2525683 (-) 375 WP_121642893.1 competence type IV pilus minor pilin ComGG Machinery gene
  D9779_RS13070 comGF 2525684..2526067 (-) 384 WP_121642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  D9779_RS13075 comGE 2526093..2526440 (-) 348 WP_121642895.1 competence type IV pilus minor pilin ComGE Machinery gene
  D9779_RS13080 comGD 2526424..2526852 (-) 429 WP_121642896.1 competence type IV pilus minor pilin ComGD Machinery gene
  D9779_RS13085 comGC 2526842..2527138 (-) 297 WP_014114400.1 comG operon protein ComGC Machinery gene
  D9779_RS13090 comGB 2527152..2528189 (-) 1038 WP_121642897.1 competence type IV pilus assembly protein ComGB Machinery gene
  D9779_RS13095 comGA 2528176..2529246 (-) 1071 WP_121642898.1 competence protein ComGA Machinery gene
  D9779_RS13105 - 2529458..2529868 (-) 411 WP_121642899.1 CBS domain-containing protein -
  D9779_RS13110 - 2529933..2530886 (-) 954 WP_010328242.1 magnesium transporter CorA family protein -
  D9779_RS13115 - 2531032..2532360 (+) 1329 WP_026014433.1 hemolysin family protein -
  D9779_RS13120 - 2532419..2533255 (-) 837 WP_121642900.1 STAS domain-containing protein -
  D9779_RS13130 mgsR 2533482..2533859 (-) 378 WP_010328239.1 transcriptional regulator MgsR -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40464.49 Da        Isoelectric Point: 8.4566

>NTDB_id=320871 D9779_RS13095 WP_121642898.1 2528176..2529246(-) (comGA) [Bacillus vallismortis strain Bac111]
MDSIEMTSRTLIEEAYSTKASDIHIVPRERDAVIHFRVDHALLKKRNMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLEEGHVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAVAAQRLVDLTCPFCENGCSSLYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHETD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=320871 D9779_RS13095 WP_121642898.1 2528176..2529246(-) (comGA) [Bacillus vallismortis strain Bac111]
TTGGATTCAATAGAAATGACTAGCAGAACCTTAATTGAAGAGGCGTATTCAACAAAGGCTTCTGACATTCACATTGTGCC
GAGGGAGCGGGACGCCGTCATTCATTTCCGGGTAGATCATGCCTTGTTGAAAAAAAGGAACATGAAAAAAGAAGAGTGTG
TAAGACTGATTTCGCATTTTAAATTTCTCTCAGCGATGGACATAGGGGAAAGACGAAAACCGCAAAATGGTTCGCTGACG
TTAAAGCTAGAGGAGGGACATGTTCATTTAAGAATGTCGACACTCCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCTCAATACAATATCCCTTCGATCGATAAACTGTCATTATTTCCGAAGACGGGAGCCACTTTACTCTCATTTTTAA
AACATTCACACGGCATGCTCATTTTTACAGGGCCGACTGGCTCAGGGAAGACGACAACATTATACTCTCTCGTTCAATAT
GCAAAAAAACATTTTAATCGAAATATCGTCACACTGGAAGACCCTGTTGAAACAAGGGATGAGGATGTTCTGCAGGTGCA
GGTGAATGAAAAAGCGGGTGTGACATATTCGGCAGGTCTGAAGGCTATTTTGCGCCATGACCCGGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATCGCAGTACGGGCAGCGATGACGGGGCATTTGGTGCTGACGAGCCTTCAT
ACGAGAGATGCGAAGGGCGCGATTTACAGGCTGCTTGAATTCGGCATTAATATGAATGAAATCGAACAGACTGTCATTGC
GGTAGCGGCTCAGCGTTTGGTTGATTTAACTTGCCCGTTTTGTGAAAACGGATGTTCATCGTTGTATTGCCGCCAGTCAC
GAAACACCAGAAGAGCAAGCGTTTATGAACTGCTTTACGGAAAAAACCTTCAGCAATGCATTCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACACTGCGTCAAATTATTAGAAAAGGAATTGCACTCGGCTACTTGACCACAAATAACTA
TGACCGGTGGGTTTATCATGAAACAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

96.348

100

0.963

Multiple sequence alignment