Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   D9779_RS12820 Genome accession   NZ_CP033052
Coordinates   2483347..2485077 (-) Length   576 a.a.
NCBI ID   WP_121642873.1    Uniprot ID   -
Organism   Bacillus vallismortis strain Bac111     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2478347..2490077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9779_RS12800 - 2479165..2480283 (+) 1119 WP_121642871.1 NADH-dependent flavin oxidoreductase -
  D9779_RS12810 spo0A 2480814..2481617 (-) 804 WP_039074432.1 sporulation transcription factor Spo0A Regulator
  D9779_RS12815 spoIVB 2481892..2483172 (-) 1281 WP_121642872.1 SpoIVB peptidase -
  D9779_RS12820 recN 2483347..2485077 (-) 1731 WP_121642873.1 DNA repair protein RecN Machinery gene
  D9779_RS12825 argR 2485112..2485561 (-) 450 WP_010328294.1 arginine repressor ArgR -
  D9779_RS12830 - 2485658..2486503 (-) 846 WP_121642874.1 TlyA family RNA methyltransferase -
  D9779_RS12835 dxs 2486500..2488401 (-) 1902 WP_010328292.1 1-deoxy-D-xylulose-5-phosphate synthase -
  D9779_RS12840 - 2488582..2489472 (-) 891 WP_121642875.1 polyprenyl synthetase family protein -
  D9779_RS12845 - 2489462..2489716 (-) 255 WP_039074437.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64638.35 Da        Isoelectric Point: 4.7154

>NTDB_id=320862 D9779_RS12820 WP_121642873.1 2483347..2485077(-) (recN) [Bacillus vallismortis strain Bac111]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVFEVC
AGQGIDVSDEMIIMRRDISTSGKSVCRINGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEAESALQ
AYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQFSNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKLSENVSNSYYLLEDATFQMRNMLDELEYDPERLNDIETRLNEIKQLKRKYGASV
EDILEYASKIEEEIDQIENRDSHLQSVKKELDSVGKDVAVEAENVSKIRKTWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTAPRNEEAPIVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAMKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTHVKPLSKQEKVTEIGRMIAGVEVTDVTKR
HAKELLRQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=320862 D9779_RS12820 WP_121642873.1 2483347..2485077(-) (recN) [Bacillus vallismortis strain Bac111]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGAGGGCTCACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAGTCCATCATCATAGATGCCATTTCTCTATTAGTCGGAGGCCGCGGCTCATCTGAAT
TTGTCAGATATGGAGAGGCAAAAGCCGAGCTTGAAGGCTTGTTTCTATTGGAGAGCGGCCATCCTGTTTTTGAAGTATGC
GCTGGGCAGGGAATTGACGTTTCAGACGAAATGATCATCATGAGGAGGGACATCAGCACGAGCGGAAAAAGCGTTTGCCG
CATTAATGGCAAGCTTGTTACGATTGCCTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAAGACGAAAATCATCTCCAGCTGTTGGACAAGTTTGCCGGAGCCGAAGCGGAAAGCGCGCTTCAA
GCGTATCAGGAAGGGTATCAACGATATATGAAGCTGCTTAAAAAGCTAAAGCAGCTTTCTGAAAGCGAACAGGAAATGGC
CCACCGTCTTGATCTCATTCAATTTCAGCTTGAAGAAATTGAATCGGCCAAGCTCGAGCTTAATGAAGATGAACAGCTCC
AGGAAGAGCGCCAGCAATTTTCAAATTTTGAAAAGATCTATGAATCGCTGCAAAATGCATATAATGCGCTTCGAAGCGAG
CAGGGCGGACTGGATTGGGTCGGAATGGCTTCAGCGCAGCTTGAAGATATATCCGATATTAACGAACCGCTGAAAAAGCT
GTCTGAAAATGTGTCGAACTCCTACTATCTTTTGGAGGACGCTACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
ATGATCCGGAACGCCTGAATGATATTGAGACGCGTCTTAATGAAATCAAACAGCTCAAACGAAAATACGGTGCGTCTGTT
GAGGATATTTTGGAATACGCTTCTAAAATTGAAGAAGAGATTGACCAAATAGAAAATAGAGACAGCCACCTTCAAAGTGT
GAAGAAGGAGCTTGATTCAGTCGGCAAAGATGTCGCAGTGGAAGCGGAAAATGTTTCAAAAATCCGCAAAACATGGGCGA
AAAAGCTGGCTGATGAGATTCATCGGGAATTAAAAAGCCTCTATATGGAAAAATCAACTTTTGATACAGAATTTAAGGTC
AGAACAGCGCCCCGAAATGAAGAGGCGCCAATTGTAAACGGCCAGCCTGTCCAACTGACTGAACAAGGGATTGATTTGGT
GAAGTTTTTAATTTCAACCAATACAGGCGAACCGCTCAAATCTCTTTCGAAAGTCGCTTCCGGAGGAGAGCTGTCACGAG
TGATGCTTGCTATGAAAAGCATTTTTTCCTCCCAACAGGATGTGACGTCGATTATATTCGATGAGGTTGATACCGGAGTA
AGCGGCAGAGTCGCACAGGCAATCGCTGAGAAGATCCATAAAGTATCAATAGGCTCGCAAGTGCTGTGCATTACACATTT
GCCTCAGGTGGCCGCCATGGCAGATACGCACCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACGACAACACATGTCA
AGCCGCTGTCTAAGCAGGAAAAGGTAACAGAAATCGGACGCATGATTGCCGGCGTCGAAGTAACAGACGTAACGAAACGC
CATGCAAAAGAACTTTTAAGACAAGCGGATCAAGTCAAAACAACCGGGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

95.66

100

0.957

Multiple sequence alignment