Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   EST51_RS09975 Genome accession   NZ_CP040263
Coordinates   2030722..2032149 (-) Length   475 a.a.
NCBI ID   WP_089502654.1    Uniprot ID   -
Organism   Escherichia coli strain 631     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2025722..2037149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EST51_RS09945 (EST51_09940) yeeZ 2025777..2026601 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  EST51_RS09950 (EST51_09945) yeeY 2026647..2027576 (+) 930 WP_023154044.1 LysR substrate-binding domain-containing protein -
  EST51_RS09955 (EST51_09950) yoeI 2027791..2027853 (+) 63 WP_010723108.1 membrane protein YoeI -
  EST51_RS09960 (EST51_09955) plaP 2027843..2029201 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  EST51_RS09965 (EST51_09960) tsuA 2029380..2030438 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  EST51_RS09970 (EST51_09965) tsuB 2030452..2030679 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  EST51_RS09975 (EST51_09970) sbcB 2030722..2032149 (-) 1428 WP_089502654.1 exodeoxyribonuclease I Machinery gene
  EST51_RS09980 (EST51_09975) dacD 2032358..2033524 (+) 1167 WP_021523140.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  EST51_RS09985 (EST51_09980) sbmC 2033643..2034116 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  EST51_RS09990 (EST51_09985) yeeA 2034314..2035372 (+) 1059 WP_001200890.1 FUSC family protein -
  EST51_RS09995 (EST51_09990) tmaR 2035544..2035873 (+) 330 WP_000450409.1 DUF496 family protein -
  EST51_RS10000 (EST51_09995) - 2035974..2036156 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  EST51_RS10005 (EST51_10000) - 2036210..2036356 (+) 147 Protein_1940 transposase domain-containing protein -
  EST51_RS10010 (EST51_10005) - 2036645..2036725 (-) 81 Protein_1941 hypothetical protein -
  EST51_RS10015 (EST51_10010) yeeW 2036771..2036965 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54512.87 Da        Isoelectric Point: 5.7523

>NTDB_id=320834 EST51_RS09975 WP_089502654.1 2030722..2032149(-) (sbcB) [Escherichia coli strain 631]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNVVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRKNPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=320834 EST51_RS09975 WP_089502654.1 2030722..2032149(-) (sbcB) [Escherichia coli strain 631]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTAATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGTCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTAAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment