Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   D9780_RS18195 Genome accession   NZ_CP033048
Coordinates   3915353..3915853 (-) Length   166 a.a.
NCBI ID   WP_073010520.1    Uniprot ID   A0A1M5VE70
Organism   Virgibacillus sp. Bac330     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3910353..3920853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9780_RS18175 - 3911716..3912657 (-) 942 WP_162985933.1 YybS family protein -
  D9780_RS18180 - 3913534..3913923 (+) 390 WP_240458840.1 DUF1189 family protein -
  D9780_RS18185 modA 3914000..3914788 (+) 789 WP_162985934.1 molybdate ABC transporter substrate-binding protein -
  D9780_RS18190 rpsR 3915103..3915333 (-) 231 WP_050350602.1 30S ribosomal protein S18 -
  D9780_RS18195 ssbA 3915353..3915853 (-) 501 WP_073010520.1 single-stranded DNA-binding protein Machinery gene
  D9780_RS18200 rpsF 3915869..3916159 (-) 291 WP_121641108.1 30S ribosomal protein S6 -
  D9780_RS18205 ychF 3916321..3917421 (-) 1101 WP_073010526.1 redox-regulated ATPase YchF -
  D9780_RS18210 - 3917665..3917862 (-) 198 WP_121641109.1 DUF951 domain-containing protein -
  D9780_RS18215 - 3918104..3919132 (-) 1029 WP_121641110.1 mechanosensitive ion channel family protein -
  D9780_RS18220 - 3919160..3920185 (-) 1026 WP_121641111.1 hypothetical protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18403.20 Da        Isoelectric Point: 4.7613

>NTDB_id=320771 D9780_RS18195 WP_073010520.1 3915353..3915853(-) (ssbA) [Virgibacillus sp. Bac330]
MLNRVVLVGRLTKDPDLRYTPSGVAVANFTLAVNRPFSNQQGNREADFINCVVWRRAAENLANYMNKGSMVGVDGRVQTR
RFEGQDGKTVFVTEIVAESVQFLETKGSSQGGGQGASGFQPNRNQGQFEPQSNPYEQSQSQNQNNKENPFQNNGEPIEIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=320771 D9780_RS18195 WP_073010520.1 3915353..3915853(-) (ssbA) [Virgibacillus sp. Bac330]
ATGTTAAATCGTGTCGTACTTGTCGGCAGGTTAACGAAGGATCCTGATTTACGTTACACCCCAAGTGGCGTAGCAGTTGC
CAATTTCACACTTGCGGTAAACCGTCCATTTTCCAATCAACAGGGGAACCGTGAAGCAGATTTTATTAACTGTGTCGTTT
GGCGTAGAGCAGCGGAAAACCTGGCGAATTATATGAATAAAGGTAGCATGGTTGGTGTGGATGGACGAGTGCAAACACGC
CGATTTGAAGGCCAAGATGGAAAAACAGTATTTGTTACTGAAATAGTGGCAGAAAGTGTTCAATTTTTGGAAACAAAAGG
TTCTTCTCAGGGCGGGGGACAAGGTGCATCAGGATTTCAACCAAACAGAAACCAAGGTCAATTCGAACCGCAATCCAACC
CATATGAACAAAGTCAAAGTCAAAATCAAAATAACAAGGAAAATCCATTTCAAAATAATGGAGAACCTATTGAAATATCA
GATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M5VE70

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.884

100

0.62
  ssb Latilactobacillus sakei subsp. sakei 23K

54.706

100

0.56
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

63.855

0.38

Multiple sequence alignment