Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   D9780_RS05400 Genome accession   NZ_CP033048
Coordinates   1208510..1208983 (+) Length   157 a.a.
NCBI ID   WP_121639520.1    Uniprot ID   -
Organism   Virgibacillus sp. Bac330     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1200113..1217042 1208510..1208983 within 0


Gene organization within MGE regions


Location: 1200113..1217042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9780_RS05355 - 1200113..1200553 (-) 441 WP_371413706.1 ImmA/IrrE family metallo-endopeptidase -
  D9780_RS05360 - 1200855..1203914 (+) 3060 WP_121639512.1 ATP-binding protein -
  D9780_RS05365 - 1204011..1204733 (+) 723 WP_121639513.1 hypothetical protein -
  D9780_RS05370 - 1204737..1205414 (-) 678 WP_121639514.1 hypothetical protein -
  D9780_RS21600 - 1205616..1205723 (-) 108 WP_162985789.1 hypothetical protein -
  D9780_RS05380 - 1205930..1206358 (-) 429 WP_121639516.1 helix-turn-helix domain-containing protein -
  D9780_RS05385 - 1206526..1206720 (+) 195 WP_121639517.1 helix-turn-helix transcriptional regulator -
  D9780_RS20985 - 1206962..1207126 (+) 165 WP_162985790.1 hypothetical protein -
  D9780_RS05390 - 1207229..1207438 (+) 210 WP_121639518.1 hypothetical protein -
  D9780_RS05395 - 1207442..1208476 (+) 1035 WP_121639519.1 hypothetical protein -
  D9780_RS05400 ssbA 1208510..1208983 (+) 474 WP_121639520.1 single-stranded DNA-binding protein Machinery gene
  D9780_RS05405 - 1209125..1209526 (+) 402 WP_121639521.1 hypothetical protein -
  D9780_RS05410 - 1209584..1210513 (+) 930 WP_121639522.1 YopX family protein -
  D9780_RS05415 - 1210627..1210878 (+) 252 WP_121639523.1 hypothetical protein -
  D9780_RS05420 - 1210875..1211168 (+) 294 WP_116279732.1 hypothetical protein -
  D9780_RS05425 - 1211250..1211675 (+) 426 WP_121639524.1 hypothetical protein -
  D9780_RS05430 - 1211847..1212053 (+) 207 WP_121639525.1 hypothetical protein -
  D9780_RS05435 - 1212173..1212655 (+) 483 WP_121639526.1 ArpU family phage packaging/lysis transcriptional regulator -
  D9780_RS20990 - 1212943..1213917 (+) 975 WP_162985791.1 hypothetical protein -
  D9780_RS05445 - 1214036..1215070 (+) 1035 WP_121639528.1 LPXTG cell wall anchor domain-containing protein -
  D9780_RS05450 - 1215860..1216120 (+) 261 WP_121639529.1 hypothetical protein -
  D9780_RS20995 - 1216229..1216396 (+) 168 WP_162985792.1 hypothetical protein -
  D9780_RS05455 - 1216389..1217042 (+) 654 WP_116278816.1 Fic family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17476.39 Da        Isoelectric Point: 8.0491

>NTDB_id=320752 D9780_RS05400 WP_121639520.1 1208510..1208983(+) (ssbA) [Virgibacillus sp. Bac330]
MTINRVVLVGRLTKDPDLRYTPNGVAVANFTLAVNRPFSNQQGNKEADFIKCVIWRKPAENLATYMHKGSMVGVDGRVQT
RRFEGQDGKTVFVTEVLAGSVQFIESKNNNSDSFKNRSHTNTPNYHEKASRGQENNFNSSFGSSGEAIDVTDDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=320752 D9780_RS05400 WP_121639520.1 1208510..1208983(+) (ssbA) [Virgibacillus sp. Bac330]
ATGACTATTAATCGTGTTGTGCTTGTAGGAAGGTTAACAAAGGATCCTGATTTACGCTATACACCAAATGGAGTGGCAGT
AGCTAATTTCACCTTAGCTGTTAACCGTCCATTTTCAAATCAACAGGGAAACAAGGAAGCCGATTTTATCAAATGCGTGA
TATGGAGAAAGCCTGCTGAAAACTTAGCGACTTATATGCATAAAGGAAGCATGGTTGGTGTGGATGGGCGAGTGCAAACA
CGCCGATTTGAAGGACAAGATGGAAAAACAGTATTTGTTACTGAAGTATTAGCAGGAAGTGTTCAATTCATAGAAAGCAA
AAATAACAATTCCGATAGTTTTAAAAACCGATCGCATACAAATACACCAAATTACCATGAAAAAGCCTCAAGAGGGCAAG
AAAATAATTTTAACAGCTCGTTTGGAAGTAGTGGAGAGGCGATAGATGTTACGGATGACGATTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.216

100

0.58
  ssb Latilactobacillus sakei subsp. sakei 23K

47.674

100

0.522
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.538

66.242

0.408

Multiple sequence alignment