Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   FEF05_RS11720 Genome accession   NZ_CP040243
Coordinates   2314910..2316991 (-) Length   693 a.a.
NCBI ID   WP_005711117.1    Uniprot ID   -
Organism   Glaesserella parasuis strain HPS-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2309910..2321991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEF05_RS11690 (FEF05_11695) - 2311538..2312296 (-) 759 WP_112063186.1 DeoR/GlpR family DNA-binding transcription regulator -
  FEF05_RS11695 (FEF05_11700) - 2312432..2312755 (-) 324 WP_005711127.1 AzlD domain-containing protein -
  FEF05_RS11700 (FEF05_11705) - 2312755..2313447 (-) 693 WP_149351272.1 AzlC family ABC transporter permease -
  FEF05_RS11705 (FEF05_11710) lptM 2313533..2313619 (-) 87 WP_071610592.1 LPS translocon maturation chaperone LptM -
  FEF05_RS11710 (FEF05_11715) - 2313883..2314140 (-) 258 WP_016528650.1 hypothetical protein -
  FEF05_RS11715 (FEF05_11720) - 2314225..2314626 (-) 402 WP_149351273.1 YgiW/YdeI family stress tolerance OB fold protein -
  FEF05_RS11720 (FEF05_11725) recG 2314910..2316991 (-) 2082 WP_005711117.1 ATP-dependent DNA helicase RecG Machinery gene
  FEF05_RS11725 (FEF05_11730) - 2317104..2318309 (-) 1206 WP_149351274.1 cupin domain-containing protein -
  FEF05_RS11730 (FEF05_11735) - 2318385..2319173 (-) 789 WP_021115348.1 BPL-N domain-containing protein -
  FEF05_RS11735 (FEF05_11740) - 2319256..2319822 (+) 567 WP_021115349.1 biotin transporter BioY -
  FEF05_RS11740 (FEF05_11745) - 2319953..2320762 (-) 810 WP_005711109.1 Cof-type HAD-IIB family hydrolase -
  FEF05_RS11745 (FEF05_11750) - 2320886..2321563 (+) 678 WP_149351275.1 phosphoribosyltransferase family protein -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77307.47 Da        Isoelectric Point: 8.4430

>NTDB_id=320718 FEF05_RS11720 WP_005711117.1 2314910..2316991(-) (recG) [Glaesserella parasuis strain HPS-1]
MNQQLLDGVPLTALSGVGAAISEKLSRIGINNVQDLLFHLPLRYEDRTRITPIADVRPESFATVEGFVQLTEVQFGRRPI
LSTTISDGTSKITLKFFNFNAGMKNSLATGVRVKAFGEIKRGRFMAEMHHPEYQIIRGNQPLELAETLTPIYPTTEGLKQ
ASLRKLTDQALALLERVQVAELLPDEFNPHKYSLKEALQLLHRPPPSVSSELLDKGEHPAQKRLIFEELLAHNLAMQQVR
MGVQQHFAEPLCYQTDLKQRFLATLPFQPTNAQSRVTAEIEQDLAKPFPMMRLVQGDVGSGKTLVAALAALLAIDNGKQV
ALMAPTEILAEQHAHNFANWLRPFGIEVGWLAGKVKGKARTAQLEAIKNGDVQMIIGTHALFQDQVEFHHLALVIIDEQH
RFGVHQRLTLREKGAKGDVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEVVRRVYQACK
NEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQAIMAEFKAADIDLLVATTVIEVGVDVP
NASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLMYKAPLGKISTKRLQVLRDSQDGFVIAEKDLEIRGPGEVLGTKQ
TGMAEFKIANLMRDRKMIPLVQSYAKQLTLKYPDTAKQLIRRWLDEKTVYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=320718 FEF05_RS11720 WP_005711117.1 2314910..2316991(-) (recG) [Glaesserella parasuis strain HPS-1]
ATGAACCAACAACTATTAGACGGTGTACCGCTAACCGCCCTTTCGGGTGTTGGGGCGGCGATTTCAGAGAAACTCAGTCG
GATCGGCATTAATAACGTGCAAGATCTGCTATTCCATTTGCCGCTACGGTATGAAGACCGTACTCGGATCACGCCGATTG
CCGATGTTCGTCCTGAAAGTTTTGCGACGGTTGAAGGCTTTGTGCAACTGACGGAAGTACAATTCGGTCGTCGCCCGATT
TTAAGTACCACGATTTCTGACGGCACGAGCAAAATTACTCTGAAATTCTTTAATTTCAATGCGGGAATGAAAAATAGTCT
GGCGACTGGCGTAAGGGTCAAAGCCTTTGGTGAGATTAAACGTGGTCGCTTTATGGCAGAAATGCATCACCCTGAATATC
AAATTATTCGGGGAAATCAACCGCTTGAGCTGGCAGAAACATTAACACCGATTTACCCGACAACCGAAGGCTTGAAGCAA
GCCTCTTTGCGTAAATTAACCGATCAAGCCTTGGCGTTACTTGAGCGTGTGCAAGTGGCAGAATTGCTTCCCGATGAATT
TAATCCACACAAATATAGCTTAAAAGAAGCCTTACAGTTGTTGCATCGACCGCCGCCGAGTGTGTCGTCCGAATTATTAG
ATAAAGGCGAACACCCTGCACAAAAACGGCTGATTTTTGAAGAGTTGTTGGCACATAATTTGGCAATGCAACAGGTGCGA
ATGGGCGTGCAACAACACTTTGCTGAACCGCTATGTTATCAAACCGATTTAAAACAACGCTTTTTGGCGACTTTGCCGTT
TCAGCCGACTAACGCCCAAAGTCGTGTAACCGCAGAGATTGAACAGGATTTGGCGAAACCTTTCCCGATGATGCGACTGG
TGCAAGGCGATGTGGGTTCAGGCAAAACCCTTGTGGCAGCCTTGGCAGCACTGCTGGCGATTGACAATGGTAAACAGGTG
GCGTTAATGGCACCGACCGAAATTCTCGCCGAGCAACACGCCCATAATTTTGCCAACTGGCTACGACCTTTTGGGATCGA
AGTGGGCTGGTTAGCTGGCAAAGTGAAAGGTAAAGCGAGAACGGCACAGTTGGAAGCGATTAAAAATGGCGATGTTCAGA
TGATTATCGGCACGCACGCCCTGTTTCAAGATCAGGTGGAATTTCATCATCTTGCTCTTGTGATTATTGATGAACAGCAC
CGCTTTGGTGTACATCAGCGTTTAACCTTACGCGAGAAAGGGGCGAAGGGCGATGTGTATCCGCACCAGTTGATTATGAC
CGCAACGCCTATTCCACGCACCTTAGCGATGACTGTCTATGCGGATTTGGATACGTCCATTATTGACGAACTTCCCCCAG
GGCGAACGCCGATTACGACGGTGGCGATTTCAGAAGATCGCCGAGATGAAGTGGTTCGCCGTGTTTATCAAGCCTGTAAA
AATGAAAAACGCCAAGCCTATTGGGTCTGTACGCTAATTGATGAGTCGGAAGTATTGGAAGCACAAGCGGCAGCGGCGAT
TGCCGAAGATTTGCAACGAGCCTTGCCAGATTTGCGGATTGGCTTGGTTCACGGGCGAATGAAACCGCAAGAAAAACAGG
CGATTATGGCGGAATTTAAGGCGGCAGATATTGATTTGTTAGTCGCAACAACAGTGATTGAAGTCGGCGTAGATGTGCCG
AATGCCAGTTTGATGATTATCGAAAATTCCGAACGCTTGGGGCTGGCACAGTTGCACCAACTGCGTGGGCGTGTCGGGCG
TGGGGCGACGGCTTCCCATTGTGTCTTGATGTACAAAGCCCCATTGGGTAAAATTTCAACTAAGCGTTTACAGGTGCTGA
GAGATAGCCAAGATGGCTTTGTGATTGCTGAAAAAGATTTGGAAATTCGAGGACCAGGCGAAGTGCTAGGCACAAAACAG
ACGGGAATGGCAGAGTTCAAGATTGCAAATTTAATGCGAGATCGTAAGATGATCCCGTTGGTGCAGAGCTACGCTAAACA
GCTAACGTTAAAATATCCCGATACAGCTAAACAGCTAATTCGCCGTTGGCTTGATGAAAAGACGGTTTATAGTAATGCGT
AA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(293-407)

Helicase conserved C-terminal domain (Helicase_C)

(475-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-674)

RecG wedge domain (RecG_wedge)

(16-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.481

97.403

0.482
  recG Bacillus subtilis subsp. subtilis str. 168

39.794

98.268

0.391
  recG/mmsA Streptococcus pneumoniae R6

39.482

94.661

0.374
  recG/mmsA Streptococcus pneumoniae R36A

39.482

94.661

0.374