Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   FEF05_RS03665 Genome accession   NZ_CP040243
Coordinates   703120..705135 (-) Length   671 a.a.
NCBI ID   WP_149350749.1    Uniprot ID   -
Organism   Glaesserella parasuis strain HPS-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 698120..710135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEF05_RS03635 (FEF05_03640) hpf 699964..700290 (-) 327 WP_005710552.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FEF05_RS03640 (FEF05_03645) - 700466..700777 (+) 312 WP_021113388.1 DUF4298 domain-containing protein -
  FEF05_RS03645 (FEF05_03650) - 700777..701712 (+) 936 WP_010785995.1 Kdo(2)-lipid IV(A) acyltransferase -
  FEF05_RS03650 (FEF05_03655) - 701834..702427 (+) 594 WP_149351284.1 XTP/dITP diphosphatase -
  FEF05_RS03655 (FEF05_03660) - 702435..702620 (+) 186 WP_005710560.1 heavy metal-binding domain-containing protein -
  FEF05_RS03660 (FEF05_03665) - 702620..703075 (+) 456 WP_149350748.1 YcgN family cysteine cluster protein -
  FEF05_RS03665 (FEF05_03670) uvrB 703120..705135 (-) 2016 WP_149350749.1 excinuclease ABC subunit UvrB Machinery gene
  FEF05_RS03670 (FEF05_03675) glnD 705296..707890 (+) 2595 WP_235685007.1 bifunctional uridylyltransferase/uridylyl-removing protein GlnD -
  FEF05_RS03675 (FEF05_03680) - 707974..708864 (+) 891 WP_021110465.1 ABC transporter permease subunit -
  FEF05_RS03680 (FEF05_03685) - 708877..709908 (+) 1032 WP_149350750.1 oligopeptide/dipeptide ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 76592.44 Da        Isoelectric Point: 5.3473

>NTDB_id=320681 FEF05_RS03665 WP_149350749.1 703120..705135(-) (uvrB) [Glaesserella parasuis strain HPS-1]
MSKQGKPFILHSPFKPSGDQPTAIAKLVEGLNDGLAHQTLLGVTGSGKTFTIANVIATLNRPAMVLAPNKTLAAQLYAEM
KAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQM
MLHLQVGEMIDQRKILSRLAELQYTRNDQAFQRATFRVRGEVIDIFPAESDDVALRVELFDDEIENLSLFDPLTGHNLGR
VPRYTIYPKTHYVTPRERILEAIEQIKKELADRRTYFIKENKLLEEQRIAQRTQFDIEMMNELGYCSGIENYSRYLSGRK
EGEPPPTLFDYMPSDGLLIIDESHVTVPQIGGMFRGDRARKETLVQYGFRLPSALDNRPLRFEEFERLSPQTIYVSATPG
PYELEKNPDVIDQVVRPTGLLDPIIEVRPVATQVDDLLSEIHKRVAVDERVLVTTLTKKMAEDLTDYLDEHGVRVRYLHS
DIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYGDRIT
NSMQKAITETERRREKQQKYNEEHGIVPQALNKKVGELLDIGQTDKPKRSKKSAKSSDDQTAYTPKSRKELEKELKVLEQ
QMRDFAKDLEFEKAAAVRDKIHQLKAYLLEL

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=320681 FEF05_RS03665 WP_149350749.1 703120..705135(-) (uvrB) [Glaesserella parasuis strain HPS-1]
ATGAGCAAACAGGGTAAACCATTTATTTTACATTCCCCCTTCAAACCCTCAGGCGACCAACCGACTGCGATTGCCAAATT
AGTCGAGGGATTGAATGATGGCTTGGCACATCAAACCTTGCTAGGTGTAACAGGATCGGGCAAAACCTTTACCATTGCCA
ATGTGATTGCGACTTTAAACCGTCCAGCAATGGTGCTTGCCCCGAACAAAACCCTTGCGGCACAACTTTATGCCGAGATG
AAAGCCTTTTTCCCTGAAAATGCGGTGGAGTATTTCGTTTCCTACTACGACTACTATCAGCCTGAAGCCTATGTGCCTGC
CAGCGATACTTTTATTGAAAAAGATGCGTCTATCAATGAGCAGATCGAACAGATGCGACTGTCTGCCACCAAATCTTTTT
TAGAAAGACGGGATACGATTGTAGTCGCATCGGTGTCGGCAATTTACGGCTTGGGAGATGTAGATGCCTATATGCAGATG
ATGTTACATCTGCAAGTGGGGGAAATGATCGACCAACGCAAAATTCTCTCTCGCCTTGCTGAATTACAATATACCCGCAA
CGATCAAGCCTTTCAGCGTGCGACTTTCCGTGTGCGTGGTGAAGTGATTGATATTTTCCCTGCCGAATCGGACGATGTTG
CTCTGCGTGTGGAGCTGTTTGATGATGAAATCGAAAATCTGTCCTTATTCGATCCGCTTACAGGGCATAATTTAGGGCGA
GTTCCCCGTTATACGATCTACCCAAAAACCCACTACGTTACGCCGAGAGAGCGGATTTTAGAGGCGATTGAGCAGATTAA
AAAAGAGCTTGCCGACCGTCGCACTTACTTTATCAAAGAGAATAAATTGCTTGAAGAACAGCGGATCGCCCAGCGTACTC
AGTTTGATATTGAGATGATGAACGAGTTGGGCTACTGCTCAGGCATTGAAAACTACTCACGTTATTTATCGGGCAGAAAA
GAGGGCGAACCGCCCCCGACCTTGTTTGACTATATGCCGTCTGACGGCTTGCTGATTATTGATGAGTCTCACGTCACCGT
GCCACAAATCGGCGGTATGTTTAGGGGAGACCGAGCAAGAAAAGAAACTTTGGTGCAATACGGCTTCCGCTTGCCGTCCG
CTTTGGATAACCGTCCGTTACGTTTTGAAGAGTTTGAACGCTTATCGCCACAGACAATCTATGTATCGGCAACCCCTGGA
CCTTACGAGTTAGAGAAAAATCCTGATGTGATCGACCAAGTGGTTCGCCCGACTGGTTTGTTAGATCCGATTATCGAAGT
TCGCCCTGTGGCAACGCAAGTTGATGATTTATTGTCAGAAATTCATAAGCGTGTGGCGGTAGATGAACGAGTGCTAGTCA
CCACGCTGACAAAAAAAATGGCGGAAGATTTAACCGACTACCTCGATGAACATGGCGTACGAGTGCGTTATCTACATAGC
GATATTGACACAGTCGAGCGGGTTGAAATTATCCACGATTTGCGAATGGGAATGTTTGATGTGTTAGTGGGAATCAACCT
ACTGCGAGAAGGTTTGGATATGCCTGAAGTGTCGCTGGTGGCGATTTTAGACGCTGACAAAGAAGGCTTTTTGCGTTCCG
AACGTTCTTTAATCCAAACCATCGGGCGTGCTGCCCGAAACCTCAACGGCAAAGCGATTTTATACGGCGACCGTATTACC
AATTCAATGCAAAAAGCGATCACCGAAACCGAACGCCGCCGAGAGAAACAGCAAAAATACAACGAAGAACACGGCATTGT
GCCACAAGCATTGAACAAAAAAGTCGGCGAGTTGCTTGATATTGGGCAGACGGATAAACCGAAACGCAGTAAGAAATCTG
CAAAATCAAGCGATGATCAGACCGCTTACACGCCGAAATCTCGCAAAGAGTTAGAAAAAGAACTGAAAGTGCTTGAGCAA
CAGATGAGAGATTTTGCTAAAGATCTTGAGTTTGAAAAAGCAGCTGCGGTGAGGGATAAGATTCATCAGTTGAAGGCGTA
TTTGTTAGAACTTTAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(162-252)

Helicase conserved C-terminal domain (Helicase_C)

(437-546)

UvrB/uvrC motif (UVR)

(632-666)

Ultra-violet resistance protein B (UvrB)

(554-595)

Type III restriction enzyme, res subunit (ResIII)

(17-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.511

98.212

0.565
  uvrB Streptococcus pneumoniae R6

57.511

98.212

0.565
  uvrB Streptococcus pneumoniae D39

57.511

98.212

0.565