Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LLKF_RS02270 Genome accession   NC_013656
Coordinates   444939..445751 (-) Length   270 a.a.
NCBI ID   WP_012897228.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis KF147     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 439939..450751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLKF_RS02245 (LLKF_0442) ytpR 440163..440789 (+) 627 WP_012897224.1 YtpR family tRNA-binding protein -
  LLKF_RS02250 (LLKF_0443) nox 440952..442292 (+) 1341 WP_012897225.1 H2O-forming NADH oxidase -
  LLKF_RS02255 (LLKF_0444) - 442383..442772 (+) 390 WP_012897226.1 single-stranded DNA-binding protein -
  LLKF_RS02260 (LLKF_0445) groES 442892..443176 (+) 285 WP_003131589.1 co-chaperone GroES -
  LLKF_RS02265 (LLKF_0446) groL 443264..444892 (+) 1629 WP_012897227.1 chaperonin GroEL -
  LLKF_RS02270 (LLKF_0447) vicX 444939..445751 (-) 813 WP_012897228.1 MBL fold metallo-hydrolase Regulator
  LLKF_RS02275 (LLKF_0448) vicK 445922..447364 (-) 1443 WP_012897229.1 sensor histidine kinase Regulator
  LLKF_RS02280 (LLKF_0449) yycF 447357..448058 (-) 702 WP_003131580.1 response regulator YycF -
  LLKF_RS02285 (LLKF_0450) tmk 448236..448871 (+) 636 WP_012897230.1 dTMP kinase -
  LLKF_RS02290 (LLKF_0451) - 449004..449864 (+) 861 WP_012897231.1 DNA polymerase III subunit delta' -
  LLKF_RS02295 (LLKF_0452) yaaT 449916..450698 (+) 783 WP_012897232.1 PSP1 domain-containing protein Regulator

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30538.43 Da        Isoelectric Point: 5.8490

>NTDB_id=32056 LLKF_RS02270 WP_012897228.1 444939..445751(-) (vicX) [Lactococcus lactis subsp. lactis KF147]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWCELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=32056 LLKF_RS02270 WP_012897228.1 444939..445751(-) (vicX) [Lactococcus lactis subsp. lactis KF147]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACCCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTGTGAACTAGATAGTAAAAATGCCTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCCATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAGAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCTTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAGGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATCTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACCTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685