Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   D4H43_RS07690 Genome accession   NZ_CP032911
Coordinates   1585134..1585871 (-) Length   245 a.a.
NCBI ID   WP_139544549.1    Uniprot ID   -
Organism   Helicobacter pylori strain 19-A-EK3     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1580134..1590871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H43_RS07670 gmd 1580349..1581494 (-) 1146 WP_139544545.1 GDP-mannose 4,6-dehydratase -
  D4H43_RS07675 - 1581525..1582937 (-) 1413 WP_139544546.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  D4H43_RS07680 comB10 1583007..1584143 (-) 1137 WP_139544547.1 DNA type IV secretion system protein ComB10 Machinery gene
  D4H43_RS07685 comB9 1584136..1585134 (-) 999 WP_139544548.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  D4H43_RS07690 comB8 1585134..1585871 (-) 738 WP_139544549.1 virB8 family protein Machinery gene
  D4H43_RS07695 comB7 1585868..1585981 (-) 114 WP_001217873.1 hypothetical protein Machinery gene
  D4H43_RS07700 comB6 1585997..1587052 (-) 1056 WP_139544664.1 P-type conjugative transfer protein TrbL Machinery gene
  D4H43_RS07705 - 1587060..1588064 (-) 1005 WP_139544550.1 PDZ domain-containing protein -
  D4H43_RS07710 - 1588064..1588366 (-) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  D4H43_RS07715 panD 1588369..1588722 (-) 354 WP_000142278.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28558.76 Da        Isoelectric Point: 8.9604

>NTDB_id=320319 D4H43_RS07690 WP_139544549.1 1585134..1585871(-) (comB8) [Helicobacter pylori strain 19-A-EK3]
MREKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=320319 D4H43_RS07690 WP_139544549.1 1585134..1585871(-) (comB8) [Helicobacter pylori strain 19-A-EK3]
ATGAGAGAAAAGCCTTTCAATAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGTCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTCAGATTGGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCCCTTGTTTTAGCGATCGTGTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGTATTAACCGCATTGATGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACCCAAAACAGCATTTAT
GCACAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCAGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTATTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACCCGCTACAGCATCACTGAAATC
ACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.98

Multiple sequence alignment