Detailed information NTG0320317

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: D4H43_RS07680
• Genome accession: NZ_CP032911
• Coordinates: 1583007..1584143 (-)
• Length: 378 a.a.
• NCBI ID: WP_139544547.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 19-A-EK3
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1578007..1589143

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4H43_RS08680	-	1579233..1579399 (+)	167	Protein_1469	anthranilate synthase component I	-
D4H43_RS07665	-	1579424..1580356 (-)	933	WP_139544544.1	GDP-L-fucose synthase	-
D4H43_RS07670	gmd	1580349..1581494 (-)	1146	WP_139544545.1	GDP-mannose 4,6-dehydratase	-
D4H43_RS07675	-	1581525..1582937 (-)	1413	WP_139544546.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4H43_RS07680	comB10	1583007..1584143 (-)	1137	WP_139544547.1	DNA type IV secretion system protein ComB10	Machinery gene
D4H43_RS07685	comB9	1584136..1585134 (-)	999	WP_139544548.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4H43_RS07690	comB8	1585134..1585871 (-)	738	WP_139544549.1	virB8 family protein	Machinery gene
D4H43_RS07695	comB7	1585868..1585981 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4H43_RS07700	comB6	1585997..1587052 (-)	1056	WP_139544664.1	P-type conjugative transfer protein TrbL	Machinery gene
D4H43_RS07705	-	1587060..1588064 (-)	1005	WP_139544550.1	PDZ domain-containing protein	-
D4H43_RS07710	-	1588064..1588366 (-)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
D4H43_RS07715	panD	1588369..1588722 (-)	354	WP_000142278.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42120.68 Da
• Isoelectric Point: 9.9021

>NTDB_id=320317 D4H43_RS07680 WP_139544547.1 1583007..1584143(-) (comB10) [Helicobacter pylori strain 19-A-EK3]
MNKWLKGAIVFVGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQSPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPMDLKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEIIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=320317 D4H43_RS07680 WP_139544547.1 1583007..1584143(-) (comB10) [Helicobacter pylori strain 19-A-EK3]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAGCCCACAGCCAACCAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTTAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTTTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATTGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCTTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGAAAAGCTGTTTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTACAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAATCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	97.354	100	0.974