Detailed information NTG0320321

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: D4H43_RS07700
• Genome accession: NZ_CP032911
• Coordinates: 1585997..1587052 (-)
• Length: 351 a.a.
• NCBI ID: WP_139544664.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 19-A-EK3
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1580997..1592052

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4H43_RS07675	-	1581525..1582937 (-)	1413	WP_139544546.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4H43_RS07680	comB10	1583007..1584143 (-)	1137	WP_139544547.1	DNA type IV secretion system protein ComB10	Machinery gene
D4H43_RS07685	comB9	1584136..1585134 (-)	999	WP_139544548.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4H43_RS07690	comB8	1585134..1585871 (-)	738	WP_139544549.1	virB8 family protein	Machinery gene
D4H43_RS07695	comB7	1585868..1585981 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4H43_RS07700	comB6	1585997..1587052 (-)	1056	WP_139544664.1	P-type conjugative transfer protein TrbL	Machinery gene
D4H43_RS07705	-	1587060..1588064 (-)	1005	WP_139544550.1	PDZ domain-containing protein	-
D4H43_RS07710	-	1588064..1588366 (-)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
D4H43_RS07715	panD	1588369..1588722 (-)	354	WP_000142278.1	aspartate 1-decarboxylase	-
D4H43_RS07720	-	1588712..1590937 (-)	2226	WP_139548842.1	ATP-dependent Clp protease ATP-binding subunit	-
D4H43_RS07725	-	1590937..1591212 (-)	276	WP_139544552.1	ATP-dependent Clp protease adaptor ClpS	-
D4H43_RS07730	-	1591227..1591640 (-)	414	WP_001023015.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39772.72 Da
• Isoelectric Point: 8.3278

>NTDB_id=320321 D4H43_RS07700 WP_139544664.1 1585997..1587052(-) (comB6) [Helicobacter pylori strain 19-A-EK3]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASTLTEALLFVGFFALFNY
ALKNPLHFYEFFQNAIFIAPNMIAQSLSQSLSNFSDHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPLLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSSSMNESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=320321 D4H43_RS07700 WP_139544664.1 1585997..1587052(-) (comB6) [Helicobacter pylori strain 19-A-EK3]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTCTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTACAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCCAGCACGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCTTTGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTGACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTCTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATACATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTTCTTCTATGAATGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACT
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (43-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	98.006	100	0.98