Detailed information NTG0320298

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: D4H71_RS07315
• Genome accession: NZ_CP032910
• Coordinates: 1482070..1483125 (-)
• Length: 351 a.a.
• NCBI ID: WP_139548697.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 20-A-EK1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1477070..1488125

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4H71_RS07290	-	1477584..1479002 (-)	1419	WP_139548595.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4H71_RS07295	comB10	1479072..1480208 (-)	1137	WP_139548596.1	DNA type IV secretion system protein ComB10	Machinery gene
D4H71_RS07300	-	1480201..1481201 (-)	1001	Protein_1385	TrbG/VirB9 family P-type conjugative transfer protein	-
D4H71_RS07305	comB8	1481201..1481944 (-)	744	WP_139548597.1	virB8 family protein	Machinery gene
D4H71_RS07310	comB7	1481941..1482054 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4H71_RS07315	comB6	1482070..1483125 (-)	1056	WP_139548697.1	P-type conjugative transfer protein TrbL	Machinery gene
D4H71_RS07320	-	1483133..1484128 (-)	996	WP_139548698.1	PDZ domain-containing protein	-
D4H71_RS07325	-	1484128..1484421 (-)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
D4H71_RS07330	panD	1484424..1484777 (-)	354	WP_000142243.1	aspartate 1-decarboxylase	-
D4H71_RS07335	-	1484767..1486992 (-)	2226	WP_139548598.1	ATP-dependent Clp protease ATP-binding subunit	-
D4H71_RS07340	-	1486992..1487267 (-)	276	WP_024112669.1	ATP-dependent Clp protease adaptor ClpS	-
D4H71_RS07345	-	1487282..1487695 (-)	414	WP_001023008.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39727.79 Da
• Isoelectric Point: 8.8165

>NTDB_id=320298 D4H71_RS07315 WP_139548697.1 1482070..1483125(-) (comB6) [Helicobacter pylori strain 20-A-EK1]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALLEALLFVGFFALFNY
ALKNPLHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALTSLQYITTPPAPSSVSTSISGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=320298 D4H71_RS07315 WP_139548697.1 1482070..1483125(-) (comB6) [Helicobacter pylori strain 20-A-EK1]
ATGAAAAATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTTTTAGAGGCGTTATTGTTTGTGGGGTTTTTTGCACTGTTTAACTAC
GCTTTAAAAAATCCTTTGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TCATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGCGTTCTG
TTTGCAATTATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTTTCAGTTACTAAGGCTTTGATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCTCTTACTTCCTTACAATATATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTACTTCTATAAGCGGTAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATTCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.151	100	0.972