Detailed information NTG0320295

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: D4H71_RS07295
• Genome accession: NZ_CP032910
• Coordinates: 1479072..1480208 (-)
• Length: 378 a.a.
• NCBI ID: WP_139548596.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 20-A-EK1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1474072..1485208

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4H71_RS08210	-	1474794..1475117 (+)	324	WP_236637843.1	hypothetical protein	-
D4H71_RS07280	-	1475504..1476436 (-)	933	WP_139548593.1	GDP-L-fucose synthase	-
D4H71_RS07285	gmd	1476429..1477574 (-)	1146	WP_139548594.1	GDP-mannose 4,6-dehydratase	-
D4H71_RS07290	-	1477584..1479002 (-)	1419	WP_139548595.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4H71_RS07295	comB10	1479072..1480208 (-)	1137	WP_139548596.1	DNA type IV secretion system protein ComB10	Machinery gene
D4H71_RS07300	-	1480201..1481201 (-)	1001	Protein_1385	TrbG/VirB9 family P-type conjugative transfer protein	-
D4H71_RS07305	comB8	1481201..1481944 (-)	744	WP_139548597.1	virB8 family protein	Machinery gene
D4H71_RS07310	comB7	1481941..1482054 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4H71_RS07315	comB6	1482070..1483125 (-)	1056	WP_139548697.1	P-type conjugative transfer protein TrbL	Machinery gene
D4H71_RS07320	-	1483133..1484128 (-)	996	WP_139548698.1	PDZ domain-containing protein	-
D4H71_RS07325	-	1484128..1484421 (-)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
D4H71_RS07330	panD	1484424..1484777 (-)	354	WP_000142243.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42309.02 Da
• Isoelectric Point: 9.8940

>NTDB_id=320295 D4H71_RS07295 WP_139548596.1 1479072..1480208(-) (comB10) [Helicobacter pylori strain 20-A-EK1]
MNKWLKGVIVFALGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQKPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPIDLKANTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=320295 D4H71_RS07295 WP_139548596.1 1479072..1480208(-) (comB10) [Helicobacter pylori strain 20-A-EK1]
ATGAATAAGTGGCTTAAGGGGGTGATTGTTTTTGCACTTGGTTTTGCAACGATTATAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAAACCACAGCCAACCAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTATTCCAAAGAAGAAACTTTTAAAAGCCCTCCCATAGATTTAAAAGC
AAATACAACCCCCCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATTGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCCTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTCGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGAATCATCACTCCCCATGGGATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGAGGTAACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTTTTCATTTCGCCTAATACTGACATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.561	100	0.966