Detailed information NTG0320274

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: D4I01_RS06970
• Genome accession: NZ_CP032909
• Coordinates: 1417328..1418464 (-)
• Length: 378 a.a.
• NCBI ID: WP_139543447.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 21-A-EK1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1412328..1423464

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4I01_RS08005	-	1412956..1413342 (+)	387	WP_236635045.1	hypothetical protein	-
D4I01_RS08010	-	1413498..1413716 (+)	219	Protein_1316	anthranilate synthase component I	-
D4I01_RS06955	-	1413744..1414676 (-)	933	WP_139543444.1	GDP-L-fucose synthase	-
D4I01_RS06960	gmd	1414669..1415814 (-)	1146	WP_139543445.1	GDP-mannose 4,6-dehydratase	-
D4I01_RS06965	-	1415845..1417257 (-)	1413	WP_139543446.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4I01_RS06970	comB10	1417328..1418464 (-)	1137	WP_139543447.1	DNA type IV secretion system protein ComB10	Machinery gene
D4I01_RS06975	comB9	1418457..1419437 (-)	981	WP_139543448.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4I01_RS06980	comB8	1419437..1420180 (-)	744	WP_001208388.1	virB8 family protein	Machinery gene
D4I01_RS06985	comB7	1420177..1420290 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4I01_RS06990	comB6	1420306..1421361 (-)	1056	WP_139543449.1	P-type conjugative transfer protein TrbL	Machinery gene
D4I01_RS06995	-	1421369..1422364 (-)	996	WP_139543450.1	PDZ domain-containing protein	-
D4I01_RS07000	-	1422364..1422665 (-)	302	Protein_1326	YbaB/EbfC family nucleoid-associated protein	-
D4I01_RS07005	panD	1422668..1423021 (-)	354	WP_139543451.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42157.62 Da
• Isoelectric Point: 9.8624

>NTDB_id=320274 D4I01_RS06970 WP_139543447.1 1417328..1418464(-) (comB10) [Helicobacter pylori strain 21-A-EK1]
MNKWLKGAIVFVGGFATITTISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQSPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFTNPPIDLKTNTTPLKKDFSSKQWDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=320274 D4I01_RS06970 WP_139543447.1 1417328..1418464(-) (comB10) [Helicobacter pylori strain 21-A-EK1]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTACAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAGCCCACAGCCAACCAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTTAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCACTCTAAAGAAGAAACTTTTACTAACCCTCCCATAGATTTAAAAAC
AAATACAACCCCCCTAAAAAAAGACTTTTCTTCAAAGCAATGGGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGTATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCTTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAAGCTGTTTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAATAAAATGGGCGAATACCGCCTGGATATTGTATGGAGT
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTG
GGATCACTTCAGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCCATTGTGGT
GATTAGAGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATTTTCTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.296	100	0.963